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Protein A003584
Author-entered Data
V1.0, Peer Reviewed
Published 17 May 2005
Automated Data
Not Reviewed
As At Publication
Automated Data
Not Reviewed
Latest from 6 Jun 2014

Rpn8

Basis Sequence: Mouse

Version 1.0, Peer Reviewed And Published 17 May 2005
Smart Output retrieved 27 Apr 2005

doi:10.1038/mp.a003584.01  How to cite this Molecule Page

hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /misc/afcs/EXTERNAL_DATA/SMART/smart.HMMs
Sequence file:            6754724.aa
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Query sequence: gi|6754724|ref|NP_034947.1|
Accession:      [none]
Description:    proteasome (prosome, macropain) 26S subunit, non-ATPase, 7 [Mus musculus]=:A003584:mouse

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
JAB_MPN  JAB/MPN domain                                 162.5    8.3e-47   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
JAB_MPN    1/1       8   143 ..     1   156 []   162.5  8.3e-47

Alignments of top-scoring domains:
JAB_MPN: domain 1 of 1, from 8 to 143: score 162.5, E = 8.3e-47
                   *->kvkvhplvllkilkhaere....gpeevcGvLlGksnkDdkdvdsir
                      kv+vhplvll++++h+ r+++ + +++v+GvLlG+++k     ++++
  gi|6754724     8    KVVVHPLVLLSVVDHFNRIgkvgNQKRVVGVLLGSWQK-----KVLD 49   

                   vtnsfalpCWdfepnesnddvvnaqeydedyshlmdeelrfvlykkvekd
                   v nsfa+p   f+++ ++d+v+   + d+dy ++m+ ++     kkv++ 
  gi|6754724    50 VSNSFAVP---FDEDDKDDSVW---FLDHDYLENMYGMF-----KKVNAR 88   

                   leiVGWyHShpdegpypsevDvathesyqapieivvvlgfkkvdpirsfs
                   ++iVGWyH++    p++++ D+a++e+++++++++v+++   +d++ +  
  gi|6754724    89 ERIVGWYHTG----PKLHKNDIAINELMKRYCPNSVLVI---IDVKPKD- 130  

                   grlslgafrltea<-*
                   ++l++ a++++e+   
  gi|6754724   131 LGLPTEAYISVEE    143  

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