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Research library: browse by date

July 2006

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The Research Library categorizes, and provides access to, all recent signaling-related research published in the Nature Publishing Group journals. The selection is deliberately broad to facilitate access to all research impacting on the signaling community. Both primary research and review articles are included, as are 'News and Views' articles.

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letter
Strategies for mitigating an influenza pandemic
Neil M. Ferguson, Derek A. T. Cummings, Christophe Fraser, James C. Cajka, Philip C. Cooley and Donald S. Burke
Nature 442, 448–452
(27 July 2006); doi:10.1038/nature04795
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letter
Endothelial tubes assemble from intracellular vacuoles in vivo
Makoto Kamei, W. Brian Saunders, Kayla J. Bayless, Louis Dye, George E. Davis and Brant M. Weinstein
Nature 442, 453–456
(27 July 2006); doi:10.1038/nature04923
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news and views
Developmental biology: The hole picture
Keith Mostov and Fernando Martin-Belmonte
Nature 442, 363–364
(27 July 2006); doi:10.1038/442363a
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letter
Electrical signals control wound healing through phosphatidylinositol-3-OH kinase-γ and PTEN
Min Zhao, Bing Song, Jin Pu, Teiji Wada, Brian Reid, Guangping Tai, Fei Wang, Aihua Guo, Petr Walczysko, Yu Gu, Takehiko Sasaki, Akira Suzuki, John V. Forrester, Henry R. Bourne, Peter N. Devreotes, Colin D. McCaig and Josef M. Penninger
Nature 442, 457–460
(27 July 2006); doi:10.1038/nature04925
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letter
IL-23 promotes tumour incidence and growth
John L. Langowski, Xueqing Zhang, Lingling Wu, Jeanine D. Mattson, Taiying Chen, Kathy Smith, Beth Basham, Terrill McClanahan, Robert A. Kastelein and Martin Oft
Nature 442, 461–465
(27 July 2006); doi:10.1038/nature04808
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letter
ATM stabilizes DNA double-strand-break complexes during V(D)J recombination
Andrea L. Bredemeyer, Girdhar G. Sharma, Ching-Yu Huang, Beth A. Helmink, Laura M. Walker, Katrina C. Khor, Beth Nuskey, Kathleen E. Sullivan, Tej K. Pandita, Craig H. Bassing and Barry P. Sleckman
Nature 442, 466–470
(27 July 2006); doi:10.1038/nature04866
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letter
Degradation of Id2 by the anaphase-promoting complex couples cell cycle exit and axonal growth
Anna Lasorella , Judith Stegmüller, Daniele Guardavaccaro, Guangchao Liu, Maria S. Carro, Gerson Rothschild, Luis de la Torre-Ubieta, Michele Pagano, Azad Bonni and Antonio Iavarone
Nature 442, 471–474
(27 July 2006); doi:10.1038/nature04895
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news and views
Developmental neurobiology: A destructive switch for neurons
Peter K. Jackson
Nature 442, 365–366
(27 July 2006); doi:10.1038/442365a
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article
Activation of the DExD/H-box protein Dbp5 by the nuclear-pore protein Gle1 and its coactivator InsP6 is required for mRNA export
Christine S. Weirich, Jan P. Erzberger, Jeffrey S. Flick, James M. Berger, Jeremy Thorner & Karsten Weis
Nature Cell Biology 8, 668–676
(June 2006); doi:10.1038/ncb1424
| Summary | Full Text (HTML / PDF) |

news and views
Unravelling mRNA export
Charles N. Cole & John J. Scarcelli
Nature Cell Biology 8, 645–647
(July 2006); doi:10.1038/ncb0706-645
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article
Neutrophil direction sensing and superoxide production linked by the GTPase-activating protein GIT2
Yuichi Mazaki, Shigeru Hashimoto, Tohru Tsujimura, Masaki Morishige, Ari Hashimoto, Kosuke Aritake, Atsuko Yamada, Jin-Min Nam, Hiroshi Kiyonari, Kazuki Nakao & Hisataka Sabe
Nature Immunology 7, 724–731
(June 2006); doi:10.1038/ni1349
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article
Natural killer cell differentiation driven by Tyro3 receptor tyrosine kinases
Anouk Caraux, Qingxian Lu, Nadine Fernandez, Sylvain Riou, James P Di Santo, David H Raulet, Greg Lemke & Claude Roth
Nature Immunology 7, 747–754
(June 2006); doi:10.1038/ni1353
| Summary | Full Text (HTML / PDF) |

news and views
NK cell development: Gas matters
Thierry Walzer & Eric Vivier
Nature Immunology 7, 702–704
(July 2006); doi:10.1038/ni0706-702
| Summary | Full Text (HTML / PDF) |

article
E2-EPF UCP targets pVHL for degradation and associates with tumor growth and metastasis
Cho-Rok Jung, Kyung-Sun Hwang, Jinsang Yoo, Won-Kyung Cho, Jin-Man Kim, Woo Ho Kim & Dong-Soo Im
Nature Medicine 12, 809–816
(July 2006); doi:10.1038/nm1440
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review
The role of nitric oxide in tumour progression
Dai Fukumura, Satoshi Kashiwagi and Rakesh K. Jain
Nature Reviews Cancer 6, 521–534
(July 2006); doi:10.1038/nrc1910
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article
JNK mediates pathogenic effects of polyglutamine-expanded androgen receptor on fast axonal transport
Gerardo Morfini, Gustavo Pigino, Györgyi Szebenyi, Yimei You, Sarah Pollema & Scott T Brady
Nature Neuroscience 9, 907–916
(June 2006); doi:10.1038/nn1717
| Summary | Full Text (HTML / PDF) |

review
Variability, compensation and homeostasis in neuron and network function
Eve Marder and Jean-Marc Goaillard
Nature Neuroscience 7, 563–574
(July 2006); doi:10.1038/nrn1949
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technology feature
Microarrays: branching out from expression analysis
Laura Bonetta
Nature Methods 3, 571–578
(July 2006); doi:10.1038/nmeth0706-571
| Summary | Full Text (HTML / PDF) |

letter
Suppression of vascular permeability and inflammation by targeting of the transcription factor c-Jun
Roger G Fahmy, Alla Waldman, Guishui Zhang, Ainslie Mitchell, Nicodemus Tedla, Hong Cai, Carolyn R Geczy, Colin N Chesterman, Michael Perry & Levon M Khachigian
Nature Biotechnology 24, 856–863
(July 2006); doi:10.1038/nbt1225
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letter
Kruppel-like factor 2 regulates thymocyte and T-cell migration
Corey M. Carlson, Bart T. Endrizzi, Jinghai Wu, Xiaojie Ding, Michael A. Weinreich, Elizabeth R. Walsh, Maqsood A. Wani, Jerry B. Lingrel, Kristin A. Hogquist and Stephen C. Jameson
Nature 442, 299–302
(20 July 2006); doi:10.1038/nature04882
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letter
TBC-domain GAPs for Rab GTPases accelerate GTP hydrolysis by a dual-finger mechanism
Xiaojing Pan, Sudharshan Eathiraj, Mary Munson and David G. Lambright
Nature 442, 303–306
(20 July 2006); doi:10.1038/nature04847
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letter
The putative oncogene GASC1 demethylates tri- and dimethylated lysine 9 on histone H3
Paul A. C. Cloos, Jesper Christensen, Karl Agger, Alessio Maiolica, Juri Rappsilber, Torben Antal, Klaus H. Hansen and Kristian Helin
Nature 442, 307–311
(20 July 2006); doi:10.1038/nature04837
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letter
The transcriptional repressor JHDM3A demethylates trimethyl histone H3 lysine 9 and lysine 36
Robert J. Klose, Kenichi Yamane, Yangjin Bae, Dianzheng Zhang, Hediye Erdjument-Bromage, Paul Tempst, Jiemin Wong and Yi Zhang
Nature 442, 312–316
(20 July 2006); doi:10.1038/nature04853
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letter
Atom-by-atom analysis of global downhill protein folding
Mourad Sadqi, David Fushman and Victor Muñoz
Nature 442, 317–321
(20 July 2006); doi:10.1038/nature04859
| First Paragraph | Full Text (HTML / PDF) |

article
Asymmetric division and cosegregation of template DNA strands in adult muscle satellite cells
Vasily Shinin, Barbara Gayraud-Morel, Danielle Gomès & Shahragim Tajbakhsh
Nature Cell Biology 8, 677–682
(July 2006); doi:10.1038/ncb1425
| Summary | Full Text (HTML / PDF) |

review
EGF-ERBB signalling: towards the systems level
Ami Citri and Yosef Yarden
Nature Reviews Molecular Cell Biology 7, 505–516
(July 2006); doi:10.1038/nrm1962
| Summary | Full Text (HTML / PDF) |

article
Interleukin 15-dependent crosstalk between conventional and plasmacytoid dendritic cells is essential for CpG-induced immune activation
Seiichi Kuwajima, Taku Sato, Kazuto Ishida, Hiroyuki Tada, Hiroyuki Tezuka & Toshiaki Ohteki
Nature Immunology 7, 740–746
(July 2006); doi:10.1038/ni1348
| Summary | Full Text (HTML / PDF) |

news and views
Division of labor and cooperation between dendritic cells
Bali Pulendran
Nature Immunology 7, 699–700
(July 2006); doi:10.1038/ni0706-699
| Summary | Full Text (HTML / PDF) |

review
Neutrophil serine proteases: specific regulators of inflammation
Christine T. N. Pham
Nature Reviews Immunology 6, 541–550
(July 2006); doi:10.1038/nri1841
| Summary | Full Text (HTML / PDF) |

article
VEGF modulates erythropoiesis through regulation of adult hepatic erythropoietin synthesis
Betty Y Y Tam, Kevin Wei, John S Rudge, Jana Hoffman, Joceyln Holash, Sang-ki Park, Jenny Yuan, Colleen Hefner, Cecile Chartier, Jeng-Shin Lee, Shelly Jiang, Nihar R Niyak, Frans A Kuypers, Lisa Ma, Uma Sundram, Grace Wu, Joseph A Garcia, Stanley L Schrier, Jacquelyn J Maher, Randall S Johnson, George D Yancopoulos, Richard C Mulligan & Calvin J Kuo
Nature Medicine 7, 793–800
(July 2006); doi:10.1038/nm1428
| Summary | Full Text (HTML / PDF) |

news and views
VEGF inhibitors make blood
Christian Fischer, Peter Carmeliet & Edward M Conway
Nature Medicine 7, 732–734
(July 2006); doi:10.1038/nm0706-732
| Summary | Full Text (HTML / PDF) |

letter
Altered neuregulin 1-erbB4 signaling contributes to NMDA> receptor hypofunction in schizophrenia
Chang-Gyu Hahn, Hoau-Yan Wang, Dan-Sung Cho, Konrad Talbot, Raquel E Gur, Wade H Berrettini, Kalindi Bakshi, Joshua Kamins, Karin E Borgmann-Winter, Steven J Siegel, Robert J Gallop & Steven E Arnold
Nature Medicine 442, 824–828
(July 2006); doi:10.1038/nm1418
| Summary | Full Text (HTML / PDF) |

news and views
Schizophrenia: signals from the other side
Gerald D Fischbach
Nature Medicine 7, 734–1735
(July 2006); doi:10.1038/nm0706-734
| Summary | Full Text (HTML / PDF) |

letter
CpG island methylator phenotype underlies sporadic microsatellite instability and is tightly associated with BRAF mutation in colorectal cancer
Daniel J Weisenberger, Kimberly D Siegmund, Mihaela Campan, Joanne Young, Tiffany I Long, Mark A Faasse, Gyeong Hoon Kang, Martin Widschwendter, Deborah Weener, Daniel Buchanan, Hoey Koh, Lisa Simms, Melissa Barker, Barbara Leggett, Joan Levine, Myungjin Kim, Amy J French, Stephen N Thibodeau, Jeremy Jass, Robert Haile & Peter W Laird
Nature Genetics 7, 787–793
(July 2006); doi:10.1038/ng1834
| Summary | Full Text (HTML / PDF) |

news and views
CIMPle origin for promoter hypermethylation in colorectal cancer?
Kornel Schuebel, Wei Chen & Stephen B Baylin
Nature Genetics 7, 738–740
(July 2006); doi:10.1038/ng0706-738
| Summary | Full Text (HTML / PDF) |

article
Role of hypothalamic Foxo1 in the regulation of food intake and energy homeostasis
Min-Seon Kim, Youngmi K Pak, Pil-Geum Jang, Cherl Namkoong, Yon-Sik Choi, Jong-Chul Won, Kyung-Sup Kim, Seung-Whan Kim, Hyo-Soo Kim, Joong-Yeol Park, Young-Bum Kim, Ki-Up Lee
Nature Neuroscience 49, 901–906
(July 2006); doi:10.1038/nn1731
| Summary | Full Text (HTML / PDF) |

review
The distribution and targeting of neuronal voltage-gated ion channels
Helen C. Lai and Lily Y. Jan
Nature Reviews Neuroscience 7, 548–562
(July 2006); doi:10.1038/nrn1938
| Summary | Full Text (HTML / PDF) |

article
Dynamic proteomics in individual human cells uncovers widespread cell-cycle dependence of nuclear proteins
Alex Sigal, Ron Milo, Ariel Cohen, Naama Geva-Zatorsky, Yael Klein, Inbal Alaluf, Naamah Swerdlin, Natalie Perzov, Tamar Danon, Yuvalal Liron, Tal Raveh, Anne E Carpenter, Galit Lahav & Uri Alon
Nature Methods 7, 525–531
(July 2006); doi:10.1038/nmeth892
| Summary | Full Text (HTML / PDF) |

review
Targeting signal transduction as a strategy to treat inflammatory diseases
Luke A. J. O'Neill
Nature Reviews Drug Discovery 7, 549–563
(July 2006); doi:10.1038/nrd2070
| Summary | Full Text (HTML / PDF) |

review
Clarifying the mechanics of DNA strand exchange in meiotic recombination
Matthew J. Neale and Scott Keeney
Nature 442, 153–158
(13 July 2006); doi:10.1038/nature04885
| Summary | Full Text (HTML / PDF) |

letter
A germline-specific class of small RNAs binds mammalian Piwi proteins
Angélique Girard, Ravi Sachidanandam, Gregory J. Hannon and Michelle A. Carmell
Nature 442, 199–202
(13 July 2006); doi:10.1038/nature04917
| First Paragraph | Full Text (HTML / PDF) |

letter
A novel class of small RNAs bind to MILI protein in mouse testes
Alexei Aravin , Dimos Gaidatzis, Sébastien Pfeffer, Mariana Lagos-Quintana, Pablo Landgraf, Nicola Iovino, Patricia Morris, Michael J. Brownstein, Satomi Kuramochi-Miyagawa, Toru Nakano, Minchen Chien, James J. Russo, Jingyue Ju, Robert Sheridan, Chris Sander, Mihaela Zavolan and Thomas Tuschl
Nature 442, 203–207
(13 July 2006); doi:10.1038/nature04916
| First Paragraph | Full Text (HTML / PDF) |

letter
Three-dimensional structure of the myosin V inhibited state by cryoelectron tomography
Jun Liu, Dianne W. Taylor, Elena B. Krementsova, Kathleen M. Trybus and Kenneth A. Taylor
Nature 442, 208–211
(13 July 2006); doi:10.1038/nature04719
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letter
The cargo-binding domain regulates structure and activity of myosin 5
Kavitha Thirumurugan, Takeshi Sakamoto, John A. Hammer III, James R. Sellers and Peter J. Knight
Nature 442, 212–215
(13 July 2006); doi:10.1038/nature04865
| First Paragraph | Full Text (HTML / PDF) |

letter
Regulation of mitotic entry by microcephalin and its overlap with ATR signalling
Gemma K. Alderton, Laura Galbiati, Elen Griffith, Katharina H. Surinya, Heidemarie Neitzel, Andrew P. Jackson, Penny A. Jeggo & Mark O'Driscoll
Nature Cell Biology 8, 725–733
(18 June 2006); doi:10.1038/ncb1431
| First Paragraph | Full Text (HTML / PDF) |

letter
Regulation of RNA-polymerase-II-dependent transcription by N-WASP and its nuclear-binding partners
Xiaoyang Wu, Youngdong Yoo, Nataly N. Okuhama, Philip W. Tucker, Gang Liu & Jun-Lin Guan
Nature Cell Biology 8, 756–753
(11 June 2006); doi:10.1038/ncb1433
| First Paragraph | Full Text (HTML / PDF) |

news and views
Actin's latest act: polymerizing to facilitate transcription?
Erwann Vieu & Nouria Hernandez
Nature Cell Biology 8, 650–651
(2006); doi:10.1038/ncb0706-650
| First Paragraph | Full Text (HTML / PDF) |

article
Fas ligand-mediated paracrine T cell regulation by the receptor NKG2D in tumor immunity
Veronika Groh, Kimberly Smythe, Zhenpeng Dai & Thomas Spies
Nature Immunology 7, 755–762
(28 May 2006); doi:10.1038/ni1350
| First Paragraph | Full Text (HTML / PDF) |

review
The many paths to p38 mitogen-activated protein kinase activation in the immune system
Jonathan D. Ashwell
Nature Reviews Immunology 6, 532–540
(July 2006); doi:10.1038/nri1865
| Summary | Full Text (HTML / PDF) |

article
E2-EPF UCP targets pVHL for degradation and associates with tumor growth and metastasis
Cho-Rok Jung, Kyung-Sun Hwang, Jinsang Yoo, Won-Kyung Cho, Jin-Man Kim, Woo Ho Kim & Dong-Soo Im
Nature Medicine 12, 755–762
(02 July 2006); doi:10.1038/nm1440
| First Paragraph | Full Text (HTML / PDF) |

review
Tumour microenvironment: TGFβ: the molecular Jekyll and Hyde of cancer
Brian Bierie and Harold L. Moses
Nature Reviews Cancer 6, 506–520
(July 2006); doi:10.1038/nrc1926
| Summary | Full Text (HTML / PDF) |

article
The multidrug-resistant human pathogen Clostridium difficile has a highly mobile, mosaic genome
Mohammed Sebaihia, Brendan W Wren, Peter Mullany, Neil F Fairweather, Nigel Minton, Richard Stabler, Nicholas R Thomson, Adam P Roberts, Ana M Cerdeño-Tárraga, Hongmei Wang, Matthew TG Holden, Anne Wright, Carol Churcher, Michael A Quail, Stephen Baker, Nathalie Bason, Karen Brooks, Tracey Chillingworth, Ann Cronin, Paul Davis, Linda Dowd, Audrey Fraser, Theresa Feltwell, Zahra Hance, Simon Holroyd, Kay Jagels, Sharon Moule, Karen Mungall, Claire Price, Ester Rabbinowitsch, Sarah Sharp, Mark Simmonds, Kim Stevens, Louise Unwin, Sally Whithead, Bruno Dupuy, Gordon Dougan, Bart Barrell & Julian Parkhill
Nature Genetics 38, 779–786
(25 June 2006); doi:10.1038/ng1830
| First Paragraph | Full Text (HTML / PDF) |

review
The neurobiology of itch
Akihiko Ikoma, Martin Steinhoff, Sonja Ständer, Gil Yosipovitch and Martin Schmelz
Nature Reviews Neuroscience 7, 535–547
(25 June 2006); doi:10.1038/nrn1950
| First Paragraph | Full Text (HTML / PDF) |

article
Automated identification of SUMOylation sites using mass spectrometry and SUMmOn pattern recognition software
Patrick G A Pedrioli, Brian Raught, Xiang-Dong Zhang, Richard Rogers, John Aitchison, Michael Matunis & Ruedi Aebersold
Nature Methods 3, 533–539
(21 June 2006); doi:10.1038/nmeth891
| First Paragraph | Full Text (HTML / PDF) |

review
Intracellular pattern recognition receptors in the host response
Etienne Meylan, Jürg Tschopp and Michael Karin
Nature 442, 39–44
(06 July 2006); doi:10.1038/nature04946
| Summary | Full Text (HTML / PDF) |

article
Selective elimination of messenger RNA prevents an incidence of untimely meiosis
Yuriko Harigaya, Hirotsugu Tanaka, Soichiro Yamanaka, Kayoko Tanaka, Yoshinori Watanabe, Chihiro Tsutsumi, Yuji Chikashige, Yasushi Hiraoka, Akira Yamashita and Masayuki Yamamoto
Nature 442, 45–50
(06 July 2006); doi:10.1038/nature04881
| Summary | Full Text (HTML / PDF) |

letter
Anti-apoptotic function of a microRNA encoded by the HSV-1 latency-associated transcript
A. Gupta, J. J. Gartner, P. Sethupathy, A. G. Hatzigeorgiou and N. W. Fraser
Nature 442, 82–85
(06 July 2006); doi:10.1038/nature04836
| First Paragraph | Full Text (HTML / PDF) |

letter
A PHD finger of NURF couples histone H3 lysine 4 trimethylation with chromatin remodelling
Joanna Wysocka, Tomek Swigut, Hua Xiao, Thomas A. Milne, So Yeon Kwon, Joe Landry, Monika Kauer, Alan J. Tackett, Brian T. Chait, Paul Badenhorst, Carl Wu and C. David Allis
Nature 442, 86–90
(06 July 2006); doi:10.1038/nature04815
| First Paragraph | Full Text (HTML / PDF) |

letter
Molecular basis for site-specific read-out of histone H3K4me3 by the BPTF PHD finger of NURF
Haitao Li, Serge Ilin, Wooikoon Wang, Elizabeth M. Duncan, Joanna Wysocka, C. David Allis and Dinshaw J. Patel
Nature 442, 91–95
(06 July 2006); doi:10.1038/nature04802
| First Paragraph | Full Text (HTML / PDF) |

article
A conserved GTPase-containing complex is required for intracellular sorting of the general amino-acid permease in yeast
Minggeng Gao & Chris A. Kaiser
Nature Cell Biology 8, 657–667
(06 July 2006); doi:10.1038/ncb1419
| First Paragraph | Full Text (HTML / PDF) |

news and views
Endosome sorting: GSE complex minds the Gap
Matthew N. J. Seaman
Nature Cell Biology 8, 648–649
(06 July 2006); doi:10.1038/ncb0706-648
| First Paragraph | Full Text (HTML / PDF) |

review article
Reading protein modifications with interaction domains
Bruce T. Seet, Ivan Dikic, Ming-Ming Zhou and Tony Pawson
Nature Reviews Molecular Cell Biology 7, 473–483
(July 2006); doi:10.1038/nrm1960
| Summary | Full Text (HTML / PDF) |

article
Regulation of naive T cell function by the NF-κB2 pathway
Naozumi Ishimaru, Hidehiro Kishimoto, Yoshio Hayashi & Jonathan Sprent
Nature Immunology 7, 763–772
(July 2006); doi:10.1038/ni1351
| Summary | Full Text (HTML / PDF) |

review article
Genetic defects in the human glycome
Hudson H. Freeze
Nature Reviews Genetics 7, 537–551
(July 2006); doi:10.1038/nrg1894
| Summary | Full Text (HTML / PDF) |

article
AMPA receptors regulate transcription of the plasticity-related immediate-early gene Arc
Vikram R Rao, Sean A Pintchovski, Jeannie Chin, Carol L Peebles, Siddhartha Mitra & Steven Finkbeiner
Nature Neuroscience 7, 887–895
(July 2006); doi:10.1038/nn1708
| Summary | Full Text (HTML / PDF) |

article
Monitoring dynamic protein interactions with photoquenching FRET
Ignacio A Demarco, Ammasi Periasamy, Cynthia F Booker & Richard N Day
Nature Methods 3, 519–524
(July 2006); doi:10.1038/nmeth889
| Summary | Full Text (HTML / PDF) |

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