Research library: Microbiology
2004: December
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December
research article
Baculovirus expression system for heterologous multiprotein complexes
Imre Berger, Daniel J Fitzgerald and Timothy J Richmond
Nature Biotechnology 22, 1583–1587
(December 2004); doi:10.1038/nbt1036
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news and views
Baculovirus solves a complex problem
Polly Roy
Nature Biotechnology 22, 1527–1528
(December 2004); doi:10.1038/nbt1204-1527
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article
Escherichia coli Hfq has distinct interaction surfaces for DsrA, rpoS and poly(A) RNAs
Peter J Mikulecky, Meenakshi K Kaw, Cristin C Brescia, Jennifer C Takach, Darren D Sledjeski and Andrew L Feig
Nature Structural and Molecular Biology 11, 1206–1214
(December 2004); doi:10.1038/nsmb858
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review article
Bacterial redox sensors
Jeffrey Green and Mark S. Paget
Nature Reviews Microbiology 2, 954–966
(December 2004); doi:10.1038/nrmicro1022
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letters to nature
Lipocalin 2 mediates an innate immune response to bacterial infection by sequestrating iron
Trude H. Flo , Kelly D. Smith , Shintaro Sato, David J. Rodriguez, Margaret A. Holmes, Roland K. Strong, Shizuo Akira and Alan Aderem
Nature 432, 917–921
(16 December 2004); doi:10.1038/nature03104
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news and views
Cell biology: Iron thievery
Jonathan Barasch and Kiyoshi Mori
Nature 432, 811–813
(16 December 2004); doi:10.1038/432811a
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review article
Making sense of it all: bacterial chemotaxis
George H. Wadhams and Judith P. Armitage
Nature Reviews Molecular Cell Biology 5, 1024–1037
(December 2004); doi:10.1038/nrm1524
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article
Bone marrow plasmacytoid dendritic cells can differentiate into myeloid dendritic cells upon virus infection
Elina I Zuniga, Dorian B McGavern, Jose L Pruneda-Paz, Chao Teng and Michael B A Oldstone
Nature Immunology 5, 1227–1234
(December 2004); doi:10.1038/ni1136
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news and views
Are dendritic cells afraid of commitment?
Anne O'Garra and Giorgio Trinchieri
Nature Immunology 5, 1206–1208
(December 2004); doi:10.1038/ni1204-1206
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review article
War and peace at mucosal surfaces
Philippe J. Sansonetti
Nature Reviews Immunology 4, 953–964
(December 2004); doi:10.1038/nri1499
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research article
Negative feedback inhibition of HIV-1 by TAT-inducible expression of siRNA
Hoshang J Unwalla, Ming-Jie Li, James D Kim, Hai Tang Li, Ali Ehsani, Jessica Alluin and John J Rossi
Nature Biotechnology 22, 1573–1578
(December 2004); doi:10.1038/nbt1040
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news and views
Doing more with less in bacterial DNA repair
Geoffrey R Weller, Vicky L Brandt and David B Roth
Nature Structural and Molecular Biology 11, 1158–1159
(December 2004); doi:10.1038/nsmb1204-1158
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review article
Viral hijacking of G-protein-coupled-receptor signalling networks
Akrit Sodhi, Silvia Montaner and J. Silvio Gutkind
Nature Reviews Molecular Cell Biology 5, 998–1012
(December 2004); doi:10.1038/nrm1529
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review article
The immunogenetics of asthma and eczema: a new focus on the epithelium
William Cookson
Nature Reviews Immunology 4, 978–988
(December 2004); doi:10.1038/nri1500
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article
Disruption of Erk-dependent type I interferon induction breaks the myxoma virus species barrier
Fuan Wang, Yiyue Ma, John W Barrett, Xiujuan Gao, Joy Loh, Erik Barton, Herbert W Virgin and IV Grant McFadden
Nature Immunology 5, 1266–1274
(December 2004); doi:10.1038/ni1132
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news and views
Why are rabbits uniquely sensitive to myxoma virus? Cherchez l'interferon!
Jan Vilček
Nature Immunology 5, 1205–1206
(December 2004); doi:10.1038/ni1204-1205
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article
Toll-like receptor 3 mediates West Nile virus entry into the brain causing lethal encephalitis
Tian Wang, Terrence Town, Lena Alexopoulou, John F Anderson, Erol Fikrig and Richard A Flavell
Nature Medicine 10, 1366–1373
(December 2004); doi:10.1038/nm1140
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news and views
West Nile virus: crossing the blood-brain barrier
Michael S Diamond and Robyn S Klein
Nature Medicine 10, 1294–1295
(December 2004); doi:10.1038/nm1204-1294
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review
The evolution of chronic infection strategies in the α-proteobacteria
Jacques Batut, Siv G. E. Andersson and David O'Callaghan
Nature Reviews Microbiology 2, 933–945
(December 01 2004); doi:10.1038/nrmicro1044
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November
review article
Subversion of phosphoinositide metabolism by intracellular bacterial pathogens
Javier Pizarro-Cerdá and Pascale Cossart
Nature Cell Biology 6, 1026–1033
(November 2004); doi:10.1038/ncb1104-1026
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review article
Intrinsic immunity: a front-line defense against viral attack
Paul D Bieniasz
Nature Immunology 5, 1109–1115
(November 2004); doi:10.1038/ni1125
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article
Nod1 responds to peptidoglycan delivered by the Helicobacter pylori cag pathogenicity island
Jérôme Viala, Catherine Chaput, Ivo G Boneca, Ana Cardona, Stephen E Girardin, Anthony P Moran, Rafika Athman, Sylvie Mémet, Michel R Huerre, Anthony J Coyle, Peter S DiStefano, Philippe J Sansonetti, Agnès Labigne, John Bertin, Dana J Philpott and Richard L Ferrero
Nature Immunology 5, 1166–1174
(November 2004); doi:10.1038/ni1131
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news and views
Inside sensors detecting outside pathogens
Ennio De Gregorio and Rino Rappuoli
Nature Immunology 5, 1099–1100
(November 2004); doi:10.1038/ni1104-1099
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review article
Retroviral restriction by APOBEC proteins
Reuben S. Harris and Mark T. Liddament
Nature Reviews Immunology 4, 868–877
(November 2004); doi:10.1038/nri1489
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news and views
H. pylori's inside job
Charlotte Schubert
Nature Medicine 10, 1164
(November 2004); doi:10.1038/nm1104-1164
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review article
Escherichia coli acid resistance: tales of an amateur acidophile
John W. Foster
Nature Reviews Microbiology 2, 898–907
(November 2004); doi:10.1038/nrmicro1021
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review article
Regulatory T cells: friend or foe in immunity to infection?
Kingston H. G. Mills
Nature Reviews Immunology 4, 841–855
(November 2004); doi:10.1038/nri1485
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review article
Recombinant protein folding and misfolding in Escherichia coli
François Baneyx and Mirna Mujacic
Nature Biotechnology 22, 1399–1408
(November 2004); doi:10.1038/nbt1029
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review article
Genome-scale models of microbial cells: evaluating the consequences of constraints
Nathan D. Price, Jennifer L. Reed and Bernhard Ø. Palsson
Nature Reviews Microbiology 2, 886–897
(November 2004); doi:10.1038/nrmicro1023
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article
Insights into assembly from structural analysis of bacteriophage PRD1
Nicola G. A. Abrescia, Joseph J. B. Cockburn , Jonathan M. Grimes, Geoffrey C. Sutton, Jonathan M. Diprose, Sarah J. Butcher, Stephen D. Fuller, Carmen San Martín, Roger M. Burnett, David I. Stuart, Dennis H. Bamford and Jaana K. H. Bamford
Nature 432, 68–74
(04 November 2004); doi:10.1038/nature03056
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review article
Antitumour effects of antiretroviral therapy
Paolo Monini, Cecilia Sgadari, Elena Toschi, Giovanni Barillari and Barbara Ensoli
Nature Reviews Cancer 4, 861–875
(November 2004); doi:10.1038/nrc1479
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October
article
Structure of the bacterial flagellar hook and implication for the molecular universal joint mechanism
Fadel A. Samatey , Hideyuki Matsunami , Katsumi Imada , Shigehiro Nagashima, Tanvir R. Shaikh, Dennis R. Thomas, James Z. Chen, David J. DeRosier, Akio Kitao and Keiichi Namba
Nature 431, 1062–1068
(28 October 2004); doi:10.1038/nature02997
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news and views
Molecular motors: Smooth coupling in Salmonella
Christopher Surridge
Nature 431, 1047
(28 October 2004); doi:10.1038/4311047b
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review article
Antimicrobial reactive oxygen and nitrogen species: concepts and controversies
Ferric C. Fang
Nature Reviews Microbiology 2, 820–832
(October 2004); doi:10.1038/nrmicro1004
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review article
Immune responses to Listeria monocytogenes
Eric G. Pamer
Nature Reviews Immunology 4, 812–823
(October 2004); doi:10.1038/nri1461
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review article
Epstein-Barr virus: 40 years on
Lawrence S. Young and Alan B. Rickinson
Nature Reviews Cancer 4, 757–768
(October 2004); doi:10.1038/nrc1452
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review article
Chlamydia and apoptosis: life and death decisions of an intracellular pathogen
Gerald I. Byrne and David M. Ojcius
Nature Reviews Microbiology 2, 802–808
(October 2004); doi:10.1038/nrmicro1007
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review article
Targeting of host-cell ubiquitin-like pathways by bacterial factors
Laurent Boyer and Emmanuel Lemichez
Nature Reviews Microbiology 2, 779–788
(October 2004); doi:10.1038/nrmicro1005
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September
review article
Oncogenic mechanisms of the Helicobacter pylori CagA protein
Masanori Hatakeyama
Nature Reviews Cancer 4, 688–694
(September 2004); doi:10.1038/nrc1433
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letters to nature
A glycolipid of hypervirulent tuberculosis strains that inhibits the innate immune response
Michael B. Reed, Pilar Domenech, Claudia Manca, Hua Su, Amy K. Barczak, Barry N. Kreiswirth, Gilla Kaplan and Clifton E. Barry III
Nature 431, 84–87
(02 September 2004); doi:10.1038/nature02837
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letters to nature
Involvement of targeted proteolysis in plant genetic transformation by Agrobacterium
Tzvi Tzfira, Manjusha Vaidya and Vitaly Citovsky
Nature 431, 87–92
(02 September 2004); doi:10.1038/nature02857
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August
letters to nature
Crystal structure of a complex between anthrax toxin and its host cell receptor
Eugenio Santelli, Laurie A. Bankston, Stephen H. Leppla and Robert C. Liddington
Nature 430, 905–908
(19 August 2004); doi:10.1038/nature02763
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news and views
Structural biology: Anthrax hijacks host receptor
James G. Bann and Scott J. Hultgren
Nature 430, 843–844
(19 August 2004); doi:10.1038/430843a
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article
Staphylococcus aureus protein A induces airway epithelial inflammatory responses by activating TNFR1
Marisa I Gómez, Aram Lee, Bharat Reddy, Amanda Muir, Grace Soong, Allyson Pitt, Ambrose Cheung and Alice Prince
Nature Medicine 10, 842–848
(August 2004); doi:10.1038/nm1079
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news and views
Staphylococcal protein A inflames the lungs
Birgitta Henriques Normark, Staffan Normark and Anna Norrby-Teglund
Nature Medicine 10, 780–781
(August 2004); doi:10.1038/nm0804-780
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July
brief communication
Evolutionary genetics: Ambiguous role of CCR5 in Y. pestis infection
Stephen J. Elvin, E. Diane Williamson, Joanne C. Scott, Jeremy N. Smith, Guillermo Pérez de Lema, Silvia Chilla, Paul Clapham, Klaus Pfeffer, Detlef Schlöndorff and Bruno Luckow
Nature 430, 606–31
(22 July 2004); doi:10.1038/nature02822
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letter
Kaposi sarcoma herpesvirus-induced cellular reprogramming contributes to the lymphatic endothelial gene expression in Kaposi sarcoma
Hsei-Wei Wang, Matthew W B Trotter, Dimitrios Lagos, Dimitra Bourboulia, Stephen Henderson, Taija Mäkinen, Stephen Elliman, Adrienne M Flanagan, Kari Alitalo and Chris Boshoff
Nature Genetics 36, 687–693
(July 2004); doi:10.1038/ng1384
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brief communication
Lymphatic reprogramming of blood vascular endothelium by Kaposi sarcoma-associated herpesvirus
Young-Kwon Hong, Kimberly Foreman, Jay W Shin, Satoshi Hirakawa, Christine L Curry, David R Sage, Towia Libermann, Bruce J Dezube, Joyce D Fingeroth and Michael Detmar
Nature Genetics 36, 683–685
(July 2004); doi:10.1038/ng1383
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news and views
APCs size up antigens
Keith S Bahjat and Stephen P Schoenberger
Nature Medicine 10, 679–681
(July 2004); doi:10.1038/nm0704-679
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review
Frontal and stealth attack strategies in microbial pathogenesis
D. Scott Merrell and Stanley Falkow
Nature 430, 250–256
(08 July 2004); doi:10.1038/nature02760
| Abstract | Full Text (HTML / PDF) |
letter
Phosphorylation of the enteropathogenic E. coli receptor by the Src-family kinase c-Fyn triggers actin pedestal formation
Neil Phillips, Richard D. Hayward and Vassilis Koronakis
Nature Cell Biology 6, 618–625
(July 2004); doi:10.1038/ncb1148
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June
article
Assembly of endocytic machinery around individual influenza viruses during viral entry
Michael J Rust, Melike Lakadamyali, Feng Zhang and Xiaowei Zhuang
Nature Structural and Molecular Biology 11, 567–573
(June 2004); doi:10.1038/nsmb769
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research article
Chemical screening by mass spectrometry to identify inhibitors of anthrax lethal factor
Dal-Hee Min, Wei-Jen Tang and Milan Mrksich
Nature Biotechnology 22, 717–723
(June 2004); doi:10.1038/nbt973
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May
news and views
Malaria: The calcium connection
Amanda Tromans
Nature 429, 253
(20 May 2004); doi:10.1038/429253a
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review article
Type IV pilus structure and bacterial pathogenicity
Lisa Craig, Michael E. Pique and John A. Tainer
Nature Reviews Microbiology 2, 363–378
(May 2004); doi:10.1038/nrmicro885
| Abstract | Full Text (HTML / PDF) |
letters to nature
Nitration of a peptide phytotoxin by bacterial nitric oxide synthase
Johan A. Kers, Michael J. Wach, Stuart B. Krasnoff, Joanne Widom, Kimberly D. Cameron, Raghida A. Bukhalid, Donna M. Gibson, Brian R. Crane and Rosemary Loria
Nature 429, 79–82
(06 May 2004); doi:10.1038/nature02504
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letters to nature
Integrating high-throughput and computational data elucidates bacterial networks
Markus W. Covert, Eric M. Knight, Jennifer L. Reed, Markus J. Herrgard and Bernhard O. Palsson
Nature 429, 92–96
(06 May 2004); doi:10.1038/nature02456
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April
review article
Cell-cycle progression and the gerneration of asymmetry in Caulobacter Crescentus
Jeffrey M. Skerker & Michael T. Laub
Nature Reviews Microbiology 2, 325–337
(April 2004); doi:10.1038/nrmicro864
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letters to nature
Bacterial disease resistance in Arabidopsis through flagellin perception
Cyril Zipfel, Silke Robatzek, Lionel Navarro, Edward J. Oakeley, Jonathan D. G. Jones, Georg Felix and Thomas Boller
Nature 428, 764–767
(15 April 2004); doi:10.1038/nature02485
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letters to nature
From molecular noise to behavioural variability in a single bacterium
Ekaterina Korobkova, Thierry Emonet, Jose M. G. Vilar, Thomas S. Shimizu and Philippe Cluzel
Nature 428, 574–578
(01 April 2004); doi:10.1038/nature02404
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March
letters to nature
Functional interactions between receptors in bacterial chemotaxis
Victor Sourjik and Howard C. Berg
Nature 428, 437–441
(25 March 2004); doi:10.1038/nature02406
| First Paragraph | Full Text (HTML / PDF) |
news and views
Translating prions at the synapse
Jonathan M. Levenson and J. David Sweatt
Nature Cell Biology 6, 184–187
(March 2004); doi:10.1038/ncb0304-184b
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review article
The evolution of genetic regulatory systems in bacteria
Harley H. McAdams, Balaji Srinivasan and Adam P. Arkin
Nature Reviews Genetics 5, 169–178
(March 2004); doi:10.1038/nrg1292
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article
Community structure and metabolism through reconstruction of microbial genomes from the environment
Gene W. Tyson, Jarrod Chapman, Philip Hugenholtz, Eric E. Allen, Rachna J. Ram, Paul M. Richardson, Victor V. Solovyev, Edward M. Rubin, Daniel S. Rokhsar and Jillian F. Banfield
Nature 428, 37–43
(04 March 2004); doi:10.1038/nature02340
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news and views
Microbiology: Reconstructing the wild types
Edward F. Delong
Nature 428, 25–26
(04 March 2004); doi:10.1038/428025a
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February
article
Secondary active transport mediated by a prokaryotic homologue of ClC Cl- channels
Alessio Accardi and Christopher Miller
Nature 427, 803–807
(26 February 2004); doi:10.1038/nature02314
| Abstract | Full Text (HTML / PDF) |
news and views
Ion transport: Spot the difference
David C. Gadsby
Nature 427, 795–797
(26 February 2004); doi:10.1038/427795a
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review article
p47 GTPases: regulators of immunity to intracellular pathogens
Gregory A. Taylor, Carl G. Feng and Alan Sher
Nature Reviews Immunology 4, 100–109
(February 2004); doi:10.1038/nri1270
| Abstract | Full Text (HTML / PDF) |
brief communication
Evolutionary genetics: CCR5 mutation and plague protection
Joan Mecsas, Greg Franklin, William A. Kuziel, Robert R. Brubaker, Stanley Falkow and Donald E. Mosier
Nature 427, 606
(12 February 2004); doi:10.1038/427606a
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news and views
GTPase twins in the SRP family
Elisabet C Mandon and Reid Gilmore
Nature Structural and Molecular Biology 11, 115–116
(February 2004); doi:10.1038/nsmb0204-115
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January
news and views
How resting T cells deMURR HIV infection
Warner C Greene
Nature Immunology 5, 18–19
(January 2004); doi:10.1038/ni0104-18
| Full Text (HTML/PDF) |
news and views
HTLV-1 sweet-talks its way into cells
Julie Overbaugh
Nature Medicine 10, 20–21
(January 2004); doi:10.1038/nm0104-20
| Full Text (HTML/PDF) |
article
The structural basis for substrate and inhibitor selectivity of the anthrax lethal factor
Benjamin E Turk, Thiang Yian Wong, Robert Schwarzenbacher, Emily T Jarrell, Stephen H Leppla, R John Collier, Robert C Liddington and Lewis C Cantley
Nature Structural and Molecular Biology 11, 60–66
(January 2004); doi:10.1038/nsmb708
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article
Identification of small molecule inhibitors of anthrax lethal factor
Rekha G Panchal, Ann R Hermone, Tam Luong Nguyen, Thiang Yian Wong, Robert Schwarzenbacher, James Schmidt, Douglas Lane, Connor McGrath, Benjamin E Turk, James Burnett, M Javad Aman, Stephen Little, Edward A Sausville, Daniel W Zaharevitz, Lewis C Cantley, Robert C Liddington, Rick Gussio and Sina Bavari
Nature Structural and Molecular Biology 11, 67–72
(January 2004); doi:10.1038/nsmb711
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article
Structure of the dengue virus envelope protein after membrane fusion
Yorgo Modis, Steven Ogata, David Clements and Stephen C. Harrison
Nature 427, 313–319
(22 January 2004); doi:10.1038/nature02165
| Summary | Full Text (HTML / PDF) |
article
Conformational change and protein-protein interactions of the fusion protein of Semliki Forest virus
Don L. Gibbons, Marie-Christine Vaney, Alain Roussel, Armelle Vigouroux, Brigid Reilly, Jean Lepault, Margaret Kielian and Félix A. Rey
Nature 427, 320–325
(22 January 2004); doi:10.1038/nature02239
| Summary | Full Text (HTML / PDF) |
news and views
Virology: A class act
Theodore S. Jardetzky and Robert A. Lamb
Nature 427, 307–308
(22 January 2004); doi:10.1038/427307a
| Full Text (HTML / PDF) |
review article
Immunity to fungal infections
Luigina Romani
Nature Reviews Immunology 4, 11–24
(January 2004); doi:10.1038/nri1255
| Summary | Full Text (HTML / PDF) |
article
Commensal anaerobic gut bacteria attenuate inflammation by regulating nuclear-cytoplasmic shuttling of PPAR-γ and RelA
Denise Kelly, Jamie I Campbell, Timothy P King, George Grant, Emmelie A Jansson, Alistair G P Coutts, Sven Pettersson and Shaun Conway
Nature Immunology 5, 104–112
(January 2004); doi:10.1038/ni1018
| Abstract | Full Text (HTML/PDF) |
news and views
ComPPARtmentalizing NF-kB in the gut
Amer A Beg
Nature Immunology 5, 14–16
(January 2004); doi:10.1038/ni0104-14
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article
The extracellular matrix protein mindin is a pattern-recognition molecule for microbial pathogens
You-Wen He, Hong Li, Jun Zhang, Chia-Lin Hsu, Emily Lin, Nu Zhang, Jian Guo, Katherine A Forbush and Michael J Bevan
Nature Immunology 5, 88–97
(January 2004); doi:10.1038/ni1021
| Abstract | Full Text (HTML/PDF) |
news and views
Mindin the fort
Christine McDonald and Gabriel Nuñez
Nature Immunology 5, 16–18
(January 2004); doi:10.1038/ni0104-16
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