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Research library: Proteolysis/Ubiquitination

2005: December | November | October | September | August | July | June | May | April | March | February | January

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Review article
Immunity by ubiquitylation: a reversible process of modification
Yun-Cai Liu, Josef Penninger and Michael Karin
Nature Reviews Immunology 5, 941–952
(December 2005); doi:10.1038/nri1731
| Summary | Full Text (HTML / PDF) |

letter
Deficiency of UBR1, a ubiquitin ligase of the N-end rule pathway, causes pancreatic dysfunction, malformations and mental retardation (Johanson-Blizzard syndrome)
Martin Zenker, Julia Mayerle, Markus M Lerch, Andreas Tagariello, Klaus Zerres, Peter R Durie, Matthias Beier, Georg Hülskamp, Celina Guzman, Helga Rehder, Frits A Beemer, Ben Hamel, Philippe Vanlieferinghen, Ruth Gershoni-Baruch, Marta W Vieira, Miroslav Dumic, Ron Auslender, Vera L Gil-da-Silva-Lopes, Simone Steinlicht, Manfred Rauh, Stavit A Shalev, Christian Thiel, Andreas Winterpacht, Yong Tae Kwon, Alexander Varshavsky and André Reis
Nature Genetics 37, 1345–1350
(December 2005); doi:10.1038/ng1681
| First Paragraph | Full Text (HTML/PDF) |

letter
The Rae1-Nup98 complex prevents aneuploidy by inhibiting securin degradation
Karthik B. Jeganathan, Liviu Malureanu and Jan M. van Deursen
Nature 438, 1036–1039
(15 December 2005); doi:10.1038/nature04221
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article
Regulation of Notch signalling by non-visual β-arrestin
Ashim Mukherjee, Alexey Veraksa, Andreas Bauer, Carine Rosse, Jacques Camonis and Spyros Artavanis-Tsakonas
Nature Cell Biology 7, 1191–1201
(December 2005); doi:10.1038/ncb1327
| Abstract | Full Text (HTML/PDF) |

news and views
Receptor regulation: β-arrestin moves up a notch
Sudha K. Shenoy & Robert J. Lefkowitz
Nature Cell Biology 7, 1159–1161
(December 2005); doi:10.1038/ncb1205-1059
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brief communication
The gene disrupted in Marinesco-Sjögren syndrome encodes SIL1, an HSPA5 cochaperone
Anna-Kaisa Anttonen, Ibrahim Mahjneh, Riikka H Hämäläinen, Clotilde Lagier-Tourenne, Outi Kopra, Laura Waris, Mikko Anttonen, Tarja Joensuu, Hannu Kalimo, Anders Paetau, Lisbeth Tranebjaerg, Denys Chaigne, Michel Koenig, Orvar Eeg-Olofsson, Bjarne Udd, Mirja Somer, Hannu Somer and Anna-Elina Lehesjoki
Nature Genetics 37, 1309–1311
(December 2005); doi:10.1038/ng1677
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brief communication
Mutations in SIL1 cause Marinesco-Sjögren syndrome, a cerebellar ataxia with cataract and myopathy
Jan Senderek, Michael Krieger, Claudia Stendel, Carsten Bergmann, Markus Moser, Nico Breitbach-Faller, Sabine Rudnik-Schöneborn, Astrid Blaschek, Nicole I Wolf, Inga Harting, Kathryn North, Janine Smith, Francesco Muntoni, Martin Brockington, Susana Quijano-Roy, Francis Renault, Ralf Herrmann, Linda M Hendershot, J Michael Schröder, Hanns Lochmüller, Haluk Topaloglu, Thomas Voit, Joachim Weis, Friedrich Ebinger and Klaus Zerres
Nature Genetics 37, 1312–1314
(December 2005); doi:10.1038/ng1678
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news and views
SILencing misbehaving proteins
Huda Y Zoghbi
Nature Genetics 37, 1302–1303
(December 2005); doi:10.1038/ng1205-1302
| Full Text (HTML/PDF) |

review article
Lysosomes and autophagy in cell death control
Guido Kroemer and Marja Jäättelä
Nature Reviews Cancer 5, 886–897
(November 2005); doi:10.1038/nrc1738
| Summary | Full Text (HTML / PDF) |

news and views
Autophagy: to die or not to die
Myrto Raftopoulou
Nature Cell Biology 7, 1056
(November 2005); doi:10.1038/ncb1105-1056
| Full Text (HTML/PDF) |

letter
Gigaxonin-controlled degradation of MAP1B light chain is critical to neuronal survival
Elizabeth Allen, Jianqing Ding, Wei Wang, Suneet Pramanik, Jonathan Chou, Vincent Yau and Yanmin Yang
Nature 438, 224–228
(10 November 2005); doi:10.1038/nature04256
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article
Dopamine covalently modifies and functionally inactivates parkin
Matthew J LaVoie, Beth L Ostaszewski, Andreas Weihofen, Michael G Schlossmacher and Dennis J Selkoe
Nature Medicine 11, 1214–1221
(November 2005); doi:10.1038/nm1314
| Abstract | Full Text (HTML/PDF) |

news and views
Neurons inflict self-harm
Mark R Cookson
Nature Medicine 11, 1159–1161
(November 2005); doi:10.1038/nm1105-1159
| Full Text (HTML/PDF) |

letter
A putative stimulatory role for activator turnover in gene expression
J. Russell Lipford, Geoffrey T. Smith, Yong Chi and Raymond J. Deshaies
Nature 438, 113–116
(03 November 2005); doi:10.1038/nature04098
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letter
A heterodimeric complex that promotes the assembly of mammalian 20S proteasomes
Yuko Hirano, Klavs B. Hendil, Hideki Yashiroda, Shun-ichiro Iemura, Ryoichi Nagane, Yusaku Hioki, Tohru Natsume, Keiji Tanaka and Shigeo Murata
Nature 437, 1381–1385
(27 October 2005); doi:10.1038/nature04106
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letter
Neddylation and deneddylation regulate Cul1 and Cul3 protein accumulation
June-Tai Wu, Hsiu-Chen Lin, Yen-Chen Hu and Cheng-Ting Chien
Nature Cell Biology 7, 1014–1020
(October 2005); doi:10.1038/ncb1301
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article
Rebuilt AAA + motors reveal operating principles for ATP-fuelled machines
Andreas Martin, Tania A. Baker and Robert T. Sauer
Nature 437, 1115–1120
(20 October 2005); doi:10.1038/nature04031
| Abstract | Full Text (HTML / PDF) |

letter
Ubx2 links the Cdc48 complex to ER-associated protein degradation
Oliver Neuber, Ernst Jarosch, Corinna Volkwein, Jan Walter and Thomas Sommer
Nature Cell Biology 7, 993–998
(October 2005); doi:10.1038/ncb1298
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letter
Membrane-bound Ubx2 recruits Cdc48 to ubiquitin ligases and their substrates to ensure efficient ER-associated protein degradation
Christian Schuberth and Alexander Buchberger
Nature Cell Biology 7, 999–1006
(October 2005); doi:10.1038/ncb1299
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article
17-AAG, an Hsp90 inhibitor, ameliorates polyglutamine-mediated motor neuron degeneration
Masahiro Waza, Hiroaki Adachi, Masahisa Katsuno, Makoto Minamiyama, Chen Sang, Fumiaki Tanaka, Akira Inukai, Manabu Doyu and Gen Sobue
Nature Medicine 11, 1088–1095
(October 2005); doi:10.1038/nm1298
| Abstract | Full Text (HTML/PDF) |

article
The N-end rule pathway as a nitric oxide sensor controlling the levels of multiple regulators
Rong-Gui Hu, Jun Sheng, Xin Qi, Zhenming Xu, Terry T. Takahashi and Alexander Varshavsky
Nature 437, 981–986
(13 October 2005); doi:10.1038/nature04027
| Abstract | Full Text (HTML / PDF) |

letter
Calcium triggers exit from meiosis II by targeting the APC/C inhibitor XErp1 for degradation
Nadine R. Rauh, Andreas Schmidt, Jenny Bormann, Erich A. Nigg and Thomas U. Mayer
Nature 437, 1048–1052
(13 October 2005); doi:10.1038/nature04093
| First Paragraph | Full Text (HTML / PDF) |

news and views
Targeting toxic proteins for turnover
Albert R La Spada and Patrick Weydt
Nature Medicine 11, 1052–1053
(October 2005); doi:10.1038/nm1005-1052
| Full Text (HTML/PDF) |

letter
A SUMOylation-dependent pathway mediates transrepression of inflammatory response genes by PPAR-γ
Gabriel Pascual, Amy L. Fong, Sumito Ogawa, Amir Gamliel, Andrew C. Li, Valentina Perissi, David W. Rose, Timothy M. Willson, Michael G. Rosenfeld and Christopher K. Glass
Nature 437, 759–763
(29 September 2005); doi:10.1038/nature03988
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letter
The BRIP1 helicase functions independently of BRCA1 in the Fanconi anemia pathway for DNA crosslink repair
Wendy L Bridge, Cassandra J Vandenberg, Roger J Franklin and Kevin Hiom
Nature Genetics 37, 953–957
(September 2005); doi:10.1038/ng1627
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letter
A human ortholog of archaeal DNA repair protein Hef is defective in Fanconi anemia complementation group M
Amom Ruhikanta Meetei, Annette L Medhurst, Chen Ling, Yutong Xue, Thiyam Ramsing Singh, Patrick Bier, Jurgen Steltenpool, Stacie Stone, Inderjeet Dokal, Christopher G Mathew, Maureen Hoatlin, Hans Joenje, Johan P de Winter and Weidong Wang
Nature Genetics 37, 958–963
(September 2005); doi:10.1038/ng1626
| First Paragraph | Full Text (HTML/PDF) |

brief communication
The BRCA1-interacting helicase BRIP1 is deficient in Fanconi anemia
Orna Levran, Claire Attwooll, Rashida T Henry, Kelly L Milton, Kornelia Neveling, Paula Rio, Sat Dev Batish, Reinhard Kalb, Eunike Velleuer, Sandra Barral, Jurg Ott, John Petrini, Detlev Schindler, Helmut Hanenberg and Arleen D Auerbach
Nature Genetics 37, 931–933
(September 2005); doi:10.1038/ng1624
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letter
The most infectious prion protein particles
Jay R. Silveira, Gregory J. Raymond, Andrew G. Hughson, Richard E. Race, Valerie L. Sim, Stanley F. Hayes and Byron Caughey
Nature 437, 257–261
(08 September 2005); doi:10.1038/nature03989
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article
Angiotensin II and EGF receptor cross-talk in chronic kidney diseases: a new therapeutic approach
Alexandre Lautrette, Shunqiang Li, Rohia Alili, Susan W Sunnarborg, Martine Burtin, David C Lee, Gérard Friedlander and Fabiola Terzi
Nature Medicine 11, 867–874
(August 2005); doi:10.1038/nm1275
| Abstract | Full Text (HTML/PDF) |

review article
The yin and yang of neurotrophin action
Bai Lu, Petti T. Pang and Newton H. Woo
Nature Reviews Neuroscience 6, 603–614
(August 2005); doi:10.1038/nrn1726
| Abstract | Full Text (HTML / PDF) |

review article
Ubiquitin and ubiquitin-like proteins as multifunctional signals
Rebecca L. Welchman, Colin Gordon and R. John Mayer
Nature Reviews Molecular Cell Biology 6, 599–609
(August 2005); doi:10.1038/nrm1700
| Abstract | Full Text (HTML / PDF) |

letter
MicroRNA-dependent localization of targeted mRNAs to mammalian P-bodies
Jidong Liu, Marco Antonio Valencia-Sanchez, Gregory J. Hannon and Roy Parker
Nature Cell Biology 7, 719–723
(July 2005); doi:10.1038/ncb1274
| First Paragraph | Full Text (HTML/PDF) |

news and views
RNAi and the P-body connection
John J. Rossi
Nature Cell Biology 7, 643–644
(July 2005); doi:10.1038/ncb0705-643
| Full Text (HTML/PDF) |

letter
SUMO-modified PCNA recruits Srs2 to prevent recombination during S phase
Boris Pfander , George-Lucian Moldovan , Meik Sacher , Carsten Hoege and Stefan Jentsch
Nature 436, 428–433
(21 July 2005); doi:10.1038/nature03665
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article
S-nitrosylated GAPDH initiates apoptotic cell death by nuclear translocation following Siah1 binding
Makoto R. Hara, Nishant Agrawal, Sangwon F. Kim, Matthew B. Cascio, Masahiro Fujimuro, Yuji Ozeki, Masaaki Takahashi, Jaime H. Cheah, Stephanie K. Tankou, Lynda D. Hester, Christopher D. Ferris, S. Diane Hayward, Solomon H. Snyder and Akira Sawa
Nature Cell Biology 7, 665–674
(July 2005); doi:10.1038/ncb1268
| Abstract | Full Text (HTML/PDF) |

news and views
A central role for S-nitrosylation in apoptosis
Moran Benhar and Jonathan S. Stamler
Nature Cell Biology 7, 645–646
(July 2005); doi:10.1038/ncb0705-645
| Full Text (HTML/PDF) |

letter
The Hedgehog-inducible ubiquitin ligase subunit WSB-1 modulates thyroid hormone activation and PTHrP secretion in the developing growth plate
Monica Dentice, Amitabha Bandyopadhyay, Balázs Gereben, Isabelle Callebaut, Marcelo A. Christoffolete, Brian W. Kim, Sahar Nissim, Jean-Paul Mornon, Ann Marie Zavacki, Anikó Zeöld, Luciane P. Capelo, Cyntia Curcio-Morelli, Rogério Ribeiro, John W. Harney, Clifford J. Tabin and Antonio C. Bianco
Nature Cell Biology 7, 698–705
(July 2005); doi:10.1038/ncb1272
| First Paragraph | Full Text (HTML/PDF) |

news and views
Huntingtin and the vicious circle
Jack Horne
Nature Cell Biology 7, 650
(July 2005); doi:10.1038/ncb0705-650
| Full Text (HTML/PDF) |

review article
AAA+ proteins: have engine, will work
Phyllis I. Hanson and Sidney W. Whiteheart
Nature Reviews Molecular Cell Biology 6, 519–529
(July 2005); doi:10.1038/nrm1684
| Summary | Full Text (HTML / PDF) |

letter
The conserved protein DCN-1/Dcn1p is required for cullin neddylation in C. elegans and S. cerevisiae
Thimo Kurz, Nurhan Özlü, Fabian Rudolf, Sean M. O'Rourke, Brian Luke, Kay Hofmann, Anthony A. Hyman, Bruce Bowerman and Matthias Peter
Nature 435, 1257–1261
(30 June 2005); doi:10.1038/nature03662
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letter
Argonaute 2/RISC resides in sites of mammalian mRNA decay known as cytoplasmic bodies
George L. Sen and Helen M. Blau
Nature Cell Biology 7, 633–636
(June 2005); doi:10.1038/ncb1265
| First Paragraph | Full Text (HTML/PDF) |

news and views
Transcription RINGs in repair
Mary Ann Osley
Nature Cell Biology 7, 553–555
(June 2005); doi:10.1038/ncb0605-553
| Full Text (HTML/PDF) |

letter
Insights into E3 ligase activity revealed by a SUMO-RanGAP1-Ubc9-Nup358 complex
David Reverter and Christopher D. Lima
Nature 435, 687–692
(02 June 2005); doi:10.1038/nature03588
| First Paragraph | Full Text (HTML / PDF) |

article
The F-box protein TIR1 is an auxin receptor
Nihal Dharmasiri, Sunethra Dharmasiri and Mark Estelle
Nature 435, 441–445
(26 May 2005); doi:10.1038/nature03543
| Summary | Full Text (HTML / PDF) |

article
The Arabidopsis F-box protein TIR1 is an auxin receptor
Stefan Kepinski and Ottoline Leyser
Nature 435, 446–451
(26 May 2005); doi:10.1038/nature03542
| Summary | Full Text (HTML / PDF) |

news and views
Plant biology: Auxin action
Judy Callis
Nature 435, 436–437
(26 May 2005); doi:10.1038/435436b
| Full Text (HTML / PDF) |

article
A RING-type ubiquitin ligase family member required to repress follicular helper T cells and autoimmunity
Carola G. Vinuesa, Matthew C. Cook, Constanza Angelucci, Vicki Athanasopoulos, Lixin Rui, Kim M. Hill, Di Yu, Heather Domaschenz, Belinda Whittle, Teresa Lambe, Ian S. Roberts, Richard R. Copley, John I. Bell, Richard J. Cornall and Christopher C. Goodnow
Nature 435, 452–458
(26 May 2005); doi:10.1038/nature03555
| Summary | Full Text (HTML / PDF) |

article
Egr-2 and Egr-3 are negative regulators of T cell activation
Meredith Safford, Samuel Collins, Michael A Lutz, Amy Allen, Ching-Tai Huang, Jeanne Kowalski, Amanda Blackford, Maureen R Horton, Charles Drake, Ronald H Schwartz and Jonathan D Powell
Nature Immunology 6, 472–480
(May 2005); doi:10.1038/ni1193
| Abstract | Full Text (HTML/PDF) |

letter
CSN facilitates Cullin-RING ubiquitin ligase function by counteracting autocatalytic adapter instability
Susan Wee, Rory K. Geyer, Takashi Toda and Dieter A. Wolf
Nature Cell Biology 7, 387–391
(April 2005); doi:10.1038/ncb1241
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article
The HEAT repeat protein Blm10 regulates the yeast proteasome by capping the core particle
Marion Schmidt, Wilhelm Haas, Bernat Crosas, Patricia G Santamaria, Steven P Gygi, Thomas Walz and Daniel Finley
Nature Structural and Molecular Biology 12, 294–303
(April 2005); doi:10.1038/nsmb914
| Abstract | Full Text (HTML/PDF) |

news and views
Staufen does double duty
Erika L Meyer and Elizabeth R Gavis
Nature Structural and Molecular Biology 12, 291–292
(April 2005); doi:10.1038/nsmb0405-291
| Full Text (HTML/PDF) |

letters to nature
Structure of the apoptotic protease-activating factor 1 bound to ADP
Stefan J. Riedl, Wenyu Li, Yang Chao, Robert Schwarzenbacher and Yigong Shi
Nature 434, 926–933
(14 April 2005); doi:10.1038/nature03465
| First Paragraph | Full Text (HTML / PDF) |

review article
IAPs, RINGs and ubiquitylation
David L. Vaux and John Silke
Nature Reviews Molecular Cell Biology 6, 287–297
(April 2005); doi:10.1038/nrm1621
| Summary | Full Text (HTML / PDF) |

research article
Pulse proteolysis: A simple method for quantitative determination of protein stability and ligand binding
Chiwook Park and Susan Marqusee
Nature Methods 2, 207–212
(March 2005); doi:10.1038/nmeth740
| Abstract | Full Text (HTML/PDF) |

letters to nature
Fission yeast Mes1p ensures the onset of meiosis II by blocking degradation of cyclin Cdc13p
Daisuke Izawa, Masuo Goto, Akira Yamashita, Hiroyuki Yamano and Masayuki Yamamoto
Nature 434, 529–533
(24 March 2005); doi:10.1038/nature03406
| First Paragraph | Full Text (HTML / PDF) |

article
A cytosolic pathway for MHC class II-restricted antigen processing that is proteasome and TAP dependent
Mona K Tewari, Gomathinayagam Sinnathamby, Deepa Rajagopal and Laurence C Eisenlohr
Nature Immunology 6, 287–294
(March 2005); doi:10.1038/ni1171
| Abstract | Full Text (HTML/PDF) |

article
SUMO modification of the ubiquitin-conjugating enzyme E2-25K
Andrea Pichler, Puck Knipscheer, Edith Oberhofer, Willem J van Dijk, Roman Körner, Jesper Velgaard Olsen, Stefan Jentsch, Frauke Melchior and Titia K Sixma
Nature Structural and Molecular Biology 12, 264–269
(March 2005); doi:10.1038/nsmb903
| Abstract | Full Text (HTML/PDF) |

article
Nucleotide-dependent substrate recognition by the AAA+ HslUV protease
Randall E Burton, Tania A Baker and Robert T Sauer
Nature Structural and Molecular Biology 12, 245–251
(March 2005); doi:10.1038/nsmb898
| Abstract | Full Text (HTML/PDF) |

article
A new method for C-terminal sequence analysis in the proteomic era
Bart Samyn, Kjell Sergeant, Pedro Castanheira, Carlos Faro and Jozef Van Beeumen
Nature Methods 2, 193–200
(March 2005); doi:10.1038/nmeth738
| Abstract | Full Text (HTML/PDF) |

news and views
ACEing GPI release
Satyajit Mayor
Nature Structural and Molecular Biology 12, 107–108
(February 2005); doi:10.1038/nsmb0205-107
| Full Text (HTML/PDF) |

article
Cathepsin L is required for endothelial progenitor cell-induced neovascularization
Carmen Urbich, Christopher Heeschen, Alexandra Aicher, Ken-ichiro Sasaki, Thomas Bruhl, Mohammad R Farhadi, Peter Vajkoczy, Wolf K Hofmann, Christoph Peters, Len A Pennacchio, Nasreddin D Abolmaali, Emmanouil Chavakis, Thomas Reinheckel, Andreas M Zeiher and Stefanie Dimmeler
Nature Medicine 11, 206–213
(February 2005); doi:10.1038/nm1182
| Abstract | Full Text (HTML/PDF) |

article
Angiotensin-converting enzyme is a GPI-anchored protein releasing factor crucial for fertilization
Gen Kondoh, Hiromasa Tojo, Yuka Nakatani, Nobuyasu Komazawa, Chie Murata, Kazuo Yamagata, Yusuke Maeda, Taroh Kinoshita, Masaru Okabe, Ryo Taguchi and Junji Takeda
Nature Medicine 11, 160–166
(February 2005); doi:10.1038/nm1179
| Abstract | Full Text (HTML/PDF) |

news and views
ACE sets up fertilization
Pierre Corvol
Nature Medicine 11, 118–119
(February 2005); doi:10.1038/nm0205-118
| Full Text (HTML/PDF) |

article
Specific and potent RNAi in the nucleus of human cells
G Brett Robb, Kirk M Brown, Jaspreet Khurana and Tariq M Rana
Nature Structural and Molecular Biology 12, 133–137
(February 2005); doi:10.1038/nsmb886
| Abstract | Full Text (HTML/PDF) |

article
Unique binding interactions among Ubc9, SUMO and RanBP2 reveal a mechanism for SUMO paralog selection
Michael H Tatham, Suhkmann Kim, Ellis Jaffray, Jing Song, Yuan Chen and Ronald T Hay
Nature Structural and Molecular Biology 12, 67–74
(January 2005); doi:10.1038/nsmb878
| Abstract | Full Text (HTML/PDF) |

review article
ADAMs: key components in EGFR signalling and development
Carl P. Blobel
Nature Reviews Molecular Cell Biology 6, 32–43
(January 2005); doi:10.1038/nrm1548
| Summary | Full Text (HTML / PDF) |

news and views
Ub in charge: Regulating E2 enzyme nuclear import
Xiang-Dong Zhang and Michael J Matunis
Nature Cell Biology 7, 12–14
(January 2005); doi:10.1038/ncb0105-12
| Full Text (HTML/PDF) |

review article
Function and regulation of cullin-RING ubiquitin ligases
Matthew D. Petroski and Raymond J. Deshaies
Nature Reviews Molecular Cell Biology 6, 9–20
(January 2005); doi:10.1038/nrm1547
| Summary | Full Text (HTML / PDF) |

article
Spink5-deficient mice mimic Netherton syndrome through degradation of desmoglein 1 by epidermal protease hyperactivity
Pascal Descargues, Céline Deraison, Chrystelle Bonnart, Maaike Kreft, Mari Kishibe, Akemi Ishida-Yamamoto, Peter Elias, Yann Barrandon, Giovanna Zambruno, Arnoud Sonnenberg and Alain Hovnanian
Nature Genetics 37, 56–65
(January 2005); doi:10.1038/ng1493
| Abstract | Full Text (HTML/PDF) |

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