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Research library: Proteolysis/Ubiquitination

2006: December | November | October | September | August | July | June | May | April | March | February | January

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Numb is a suppressor of Hedgehog signalling and targets Gli1 for Itch-dependent ubiquitination
Lucia Di Marcotullio, Elisabetta Ferretti, Azzura Greco, Enrico De Smaele, Agnese Po, Maria Anna Sico, Maurizio Alimandi, Giuseppe Giannini, Marella Maroder, Isabella Screpanti & Alberto Gulino
Nature Cell Biology 8, 1415–1423
(December 2006); doi:10.1038/ncb1510
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SUMO-specific protease SUSP4 positively regulates p53 by promoting Mdm2 self-ubiquitination
Moon Hee Lee, Sung Won Lee, Eun Joo Lee, Soo Joon Choi, Sung Soo Chung, Jae Il Lee, Joong Myung Cho, Jae Hong Seol, Sung Hee Baek, Keun Il Kim, Tomoki Chiba, Keiji Tanaka, Ok Sun Bang & Chin Ha Chung
Nature Cell Biology 8, 1424–1431
(December 2006); doi:10.1038/ncb1512
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Bace1 modulates myelination in the central and peripheral nervous system
Xiangyou Hu, Caitlin W Hicks, Wanxia He, Philip Wong, Wendy B Macklin, Bruce D Trapp & Riqiang Yan
Nature Neuroscience 9, 1520–1525
(December 2006); doi:10.1038/nn1797
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CUL4-DDB1 ubiquitin ligase interacts with multiple WD40-repeat proteins and regulates histone methylation
Leigh Ann Higa, Min Wu, Tao Ye, Ryuji Kobayashi, Hong Sun & Hui Zhang
Nature Cell Biology 8, 1277–1283
(November 2006); doi:10.1038/ncb1490
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Surface expression of MHC class II in dendritic cells is controlled by regulated ubiquitination
Jeoung-Sook Shin, Melanie Ebersold, Marc Pypaert, Lelia Delamarre, Adam Hartley and Ira Mellman
Nature 444 115–118
(02 November 2006); doi:10.1038/nature05261
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article
Molecular mechanisms of coupled monoubiquitination
Tanja Woelk, Barbara Oldrini, Elena Maspero, Stefano Confalonieri, Elena Cavallaro, Pier Paolo Di Fiore, & Simona Polo
Nature Cell Biology 8, 1246–1254
(November 2006); doi:10.1038/ncb1484
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news and views
Working out coupled monoubiquitination
Kaisa Haglund & Harald Stenmark
Nature Cell Biology 8, 1218–1219
(November 2006); doi:10.1038/ncb1106-1218
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review
Cysteine cathepsins: multifunctional enzymes in cancer
Mona Mostafa Mohamed and Bonnie F. Sloane
Nature Reviews Cancer 6, 764–775
(October 2006); doi:10.1038/nrc1949
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article
Spatially regulated ubiquitin ligation by an ER/nuclear membrane ligase
Min Deng and Mark Hochstrasser
Nature 443, 827–831
(19 October 2006); doi:10.1038/nature05170
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article
Meiotic regulation of the CDK activator RINGO/Speedy by ubiquitin-proteasome-mediated processing and degradation
Gustavo J. Gutierrez, Andrea Vögtlin, Ana Castro, Ingvar Ferby, Giorgia Salvagiotto, Ze'ev Ronai, Thierry Lorca & Angel R. Nebreda
Nature Cell Biology 8, 1084–1094
(2006); doi:10.1038/ncb1472
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review
Ubiquitin and ubiquitin-like proteins in cancer pathogenesis
Daniela Hoeller, Christina-Maria Hecker and Ivan Dikic
Nature Reviews Cancer 6, 776–788
(2006); doi:10.1038/nrc1994
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Calpain-mediated cleavage of Atg5 switches autophagy to apoptosis
Shida Yousefi, Remo Perozzo, Inès Schmid, Andrew Ziemiecki, Thomas Schaffner, Leonardo Scapozza, Thomas Brunner & Hans-Uwe Simon
Nature Cell Biology 8, 1124–1132
(October 2006); doi:10.1038/ncb1482
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Atg5: more than an autophagy factor
Patrice Codogno & Alfred J. Meijer
Nature Cell Biology 8, 1045–1047
(October 2006); doi:10.1038/ncb1006-1045
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Proteasome recruitment and activation of the Uch37 deubiquitinating enzyme by Adrm1
Tingting Yao, Ling Song, Wei Xu, George N. DeMartino, Laurence Florens, Selene K. Swanson, Michael P. Washburn, Ronald C. Conaway, Joan Weliky Conaway & Robert E. Cohen
Nature Cell Biology 8, 994–1002
(September 2006); doi:10.1038/ncb1460
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review
The anaphase promoting complex/cyclosome: a machine designed to destroy
Jan-Michael Peters
Nature Reviews Molecular Cell Biology 7, 644–656
(September 2006); doi:10.1038/nrm1988
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Proteolytic turnover of the Gal4 transcription factor is not required for function in vivo
Kip Nalley, Stephen Albert Johnston and Thomas Kodadek
Nature 442, 1054–1057
(31 August 2006); doi:10.1038/nature05067
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article
Key function for the Ubc13 E2 ubiquitin-conjugating enzyme in immune receptor signaling
Masahiro Yamamoto, Toru Okamoto, Kiyoshi Takeda, Shintaro Sato, Hideki Sanjo, Satoshi Uematsu, Tatsuya Saitoh, Naoki Yamamoto, Hiroaki Sakurai, Ken J Ishii, Shoji Yamaoka, Taro Kawai, Yoshiharu Matsuura, Osamu Takeuchi & Shizuo Akirar
Nature Immunology 7, 962–970
(September 2006); doi:10.1038/ni1367
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news and views
E2 enzymes: expanding the 'ubi-verse' of immune signaling
Averil Ma & Emre Turer
Nature Immunology 7, 903–904
(September 2006); doi:10.1038/ni0906-903
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review
Divorcing ARF and p53: an unsettled case
Charles J. Sherr
Nature Reviews Cancer 7, 663–673
(September 2006); doi:10.1038/nrc1954
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A regulated interaction with the UIM protein Eps15 implicates parkin in EGF receptor trafficking and PI(3)K-Akt signalling
Lara Fallon, Catherine M.L. Bélanger, Amadou T. Corera, Maria Kontogiannea, Elsa Regan-Klapisz, France Moreau, Jarno Voortman, Michael Haber, Geneviève Rouleau, Thorhildur Thorarinsdottir, Alexis Brice, Paul M.P. van Bergen en Henegouwen & Edward A. Fon
Nature Cell Biology 8, 834–842
(August 2006); doi:10.1038/ncb1441
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news and views
EGFR trafficking: parkin' in a jam
Koraljka Husnjak & Ivan Dikic
Nature Cell Biology 8, 787–788
(August 2006); doi:10.1038/ncb0806-787
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Critical role for Daxx in regulating Mdm2
Jun Tang, Li-Ke Qu, Jianke Zhang, Wenge Wang, Jennifer S. Michaelson, Yan Y. Degenhardt, Wafik S. El-Deiry & Xiaolu Yang
Nature Cell Biology 8, 855–862
(August 2006); doi:10.1038/ncb1442
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Balancing Mdm2 — a Daxx-HAUSP matter
Ze'ev Ronai
Nature Cell Biology 8, 790–791
(August 2006); doi:10.1038/ncb0806-790
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article
Proteasome-dependent degradation of Est1p regulates the cell cycle–restricted assembly of telomerase in Saccharomyces cerevisiae
Jennifer L Osterhage, Jennell M Talley & Katherine L Friedman
Nature Strcutural & Molecular Biology 9, 720–728
(10 August 2006); doi:10.1038/nsmb1125
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SPPL2a and SPPL2b promote intramembrane proteolysis of TNFα in activated dendritic cells to trigger IL-12 production
Elena Friedmann, Ehud Hauben, Kerstin Maylandt, Simone Schleeger, Sarah Vreugde, Stefan F. Lichtenthaler, Peer-Hendrik Kuhn, Daniela Stauffer, Giorgio Rovelli & Bruno Martoglio
Nature Cell Biology 8, 843–848
(10 August 2006); doi:10.1038/ncb1440
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E2-EPF UCP targets pVHL for degradation and associates with tumor growth and metastasis
Cho-Rok Jung, Kyung-Sun Hwang, Jinsang Yoo, Won-Kyung Cho, Jin-Man Kim, Woo Ho Kim & Dong-Soo Im
Nature Medicine 12, 809–816
(July 2006); doi:10.1038/nm1440
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review
Neutrophil serine proteases: specific regulators of inflammation
Christine T. N. Pham
Nature Reviews Immunology 6, 541–550
(July 2006); doi:10.1038/nri1841
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E2-EPF UCP targets pVHL for degradation and associates with tumor growth and metastasis
Cho-Rok Jung, Kyung-Sun Hwang, Jinsang Yoo, Won-Kyung Cho, Jin-Man Kim, Woo Ho Kim & Dong-Soo Im
Nature Medicine 12, 755–762
(02 July 2006); doi:10.1038/nm1440
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Activity-dependent dynamics and sequestration of proteasomes in dendritic spines
Baris Bingol and Erin M. Schuman
Nature 441, 1144–1148
(29 June 2006); doi:10.1038/nature04769
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Early mitotic degradation of Nek2A depends on Cdc20-independent interaction with the APC/C
Michelle J. Hayes, Yuu Kimata, Samantha L. Wattam, Catherine Lindon, Guojie Mao, Hiroyuki Yamano & Andrew M. Fry
Nature Cell Biology 8, 607 - 614
(June 2006); doi:10.1038/ncb1410
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review article
Regulation of DNA repair by ubiquitylation
Tony T. Huang and Alan D. D'Andrea
Nature Reviews Molecular Cell Biology 7, 323–334
(May 2006); doi:10.1038/nrm1908
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A ubiquitin–interacting motif protects polyubiquitinated Met4 from degradation by the 26S proteasome
Karin Flick, Shahri Raasi, Hongwei Zhang, James L. Yen & Peter Kaiser
Nature Cell Biology 8, 509–515
(May 2006); doi:10.1038/ncb1402
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review
Ubiquitin ligases: cell–cycle control and cancer
Keiichi I. Nakayama and Keiko Nakayama
Nature Reviews Cancer 6, 369–381
(May 2006); doi:10.1038/nrc1881
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The KLHL12-Cullin-3 ubiquitin ligase negatively regulates the Wnt-beta-catenin pathway by targeting Dishevelled for degradation
Stephane Angers, Chris J. Thorpe, Travis L. Biechele, Seth J. Goldenberg, Ning Zheng, Michael J. MacCoss & Randall T. Moon
Nature Cell Biology 8, 348–357
(April 2006); doi:10.1038/ncb1381
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The reversibility of mitotic exit in vertebrate cells
Tamara A. Potapova, John R. Daum, Bradley D. Pittman, Joanna R. Hudson, Tara N. Jones, David L. Satinover, P. Todd Stukenberg and Gary J. Gorbsky
Nature 440, 954–958
(13 April 2006); doi:10.1038/nature04652
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article
Regulation of monoubiquitinated PCNA by DUB autocleavage
Tony T. Huang, Sebastian M.B. Nijman, Kanchan D. Mirchandani, Paul J. Galardy, Martin A. Cohn, Wilhelm Haas, Steven P. Gygi, Hidde L. Ploegh, René Bernards &: Alan D. D'Andrea
Nature Cell Biology 8, 341–347
(2006); doi:10.1038/ncb1378
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NEMO is a sensor of Lys 63-linked polyubiquitination and functions in NF-κB activation
Chuan-Jin Wu, Dietrich B. Conze, Tao Li, Srinivasa M. Srinivasula & Jonathan D. Ashwell
Nature Cell Biology 80, 398–406
(2006); doi:10.1038/ncb1384
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CHIP-mediated stress recovery by sequential ubiquitination of substrates and Hsp70
Shu-Bing Qian, Holly McDonough, Frank Boellmann, Douglas M. Cyr and Cam Patterson
Nature 440, 551–555
(23 March 2006); doi:10.1038/nature04600
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Intracellular trafficking and proteolysis of the Arabidopsis auxin-efflux facilitator PIN2 are involved in root gravitropism
Lindy Abas, René Benjamins, Nenad Malenica, Tomasz Paciorek, Justyna Wiřniewska, Jeanette C. Moulinier-Anzola, Tobias Sieberer, Jiří Friml and Christian Luschnig
Nature Cell Biology 8, 249–256
(March 2006); doi:10.1038/ncb1369
| Abstract | Full Text (HTML/PDF) |

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Structural basis for ubiquitin recognition and autoubiquitination by Rabex-5
Sangho Lee, Yien Che Tsai, Rafael Mattera, William J Smith, Michael S Kostelansky, Allan M Weissman, Juan S Bonifacino and James H Hurley
Nature Structural and Molecular Biology 13, 264–271
(March 2006); doi:10.1038/nsmb1064
| Abstract | Full Text (HTML/PDF) |

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Double-sided ubiquitin binding of Hrs-UIM in endosomal protein sorting
Satoshi Hirano, Masato Kawasaki, Hideaki Ura, Ryuichi Kato, Camilla Raiborg, Harald Stenmark and Soichi Wakatsuki
Nature Structural and Molecular Biology 13, 272–277
(March 2006); doi:10.1038/nsmb1051
| Abstract | Full Text (HTML/PDF) |

news and views
U2
Steven L Alam and Wesley I Sundquist
Nature Structural and Molecular Biology 13, 186–188
(March 2006); doi:10.1038/nsmb0306-186
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V-ATPase interacts with ARNO and Arf6 in early endosomes and regulates the protein degradative pathway
Andrés Hurtado-Lorenzo, Mhairi Skinner, Jaafar El Annan, Masamitsu Futai, Ge-Hong Sun-Wada, Sylvain Bourgoin, James Casanova, Alan Wildeman, Shaliha Bechoua, Dennis A. Ausiello, Dennis Brown and Vladimir Marshansky
Nature Cell Biology 8, 124–136
(February 2006); doi:10.1038/ncb1348
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V-ATPase: a potential pH sensor
Chiara Recchi and Philippe Chavrier
Nature Cell Biology 8, 107–109
(February 2006); doi:10.1038/ncb0206-107
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ClpS is an essential component of the N-end rule pathway in Escherichia coli
A. Erbse, R. Schmidt, T. Bornemann, J. Schneider-Mergener, A. Mogk, R. Zahn, D. A. Dougan and B. Bukau
Nature 439, 753–756
(09 February 2006); doi:10.1038/nature04412
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Regulation of ubiquitin-binding proteins by monoubiquitination
Daniela Hoeller, Nicola Crosetto, Blagoy Blagoev, Camilla Raiborg, Ritva Tikkanen, Sebastian Wagner, Katarzyna Kowanetz, Rainer Breitling, Matthias Mann, Harald Stenmark and Ivan Dikic
Nature Cell Biology 8, 163–169
(February 2006); doi:10.1038/ncb1354
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Suppressor of cytokine signaling 1 negatively regulates Toll-like receptor signaling by mediating Mal degradation
Ashley Mansell, Rosealee Smith, Sarah L Doyle, Pearl Gray, Jennifer E Fenner, Peter J Crack, Sandra E Nicholson, Douglas J Hilton, Luke A J O'Neill and Paul J Hertzog
Nature Immunology 7, 148–155
(February 2006); doi:10.1038/ni1299
| Abstract | Full Text (HTML/PDF) |

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Mal-function of TLRs by SOCS
Takashi Kobayashi, Giichi Takaesu and Akihiko Yoshimura
Nature Immunology 7, 123–124
(February 2006); doi:10.1038/ni0206-123
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The aminopeptidase ERAAP shapes the peptide repertoire displayed by major histocompatibility complex class I molecules
Gianna Elena Hammer, Federico Gonzalez, Marine Champsaur, Dragana Cado and Nilabh Shastri
Nature Immunology 7, 103–112
(January 2006); doi:10.1038/ni1286
| Abstract | Full Text (HTML/PDF) |

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The 'chop-and-change' of MHC class I assembly
Tim Elliott
Nature Immunology 7, 7–9
(January 2006); doi:10.1038/ni0106-7
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Src-like adaptor protein regulates TCR expression on thymocytes by linking the ubiquitin ligase c-Cbl to the TCR complex
Margaret D Myers, Tomasz Sosinowski, Leonard L Dragone, Carmen White, Hamid Band, Hua Gu and Arthur Weiss
Nature Immunology 7, 57–66
(January 2006); doi:10.1038/ni1291
| Abstract | Full Text (HTML/PDF) |

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A SAGA of proteasomal ATPases
Sowmya Swaminathan
Nature Cell Biology 8, 13
(January 2006); doi:10.1038/ncb0106-13
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