Research library: Small RNA
2009:
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December
letter
The EMT-activator ZEB1 promotes tumorigenicity by repressing stemness-inhibiting microRNAs
Ulrich Wellner et al.
Nature Cell Biology 11, 1487–1495
(December 2009); doi:10.1038/ncb1998
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article
The let-7 target gene mouse lin-41 is a stem cell specific E3 ubiquitin ligase for the miRNA pathway protein Ago2
Agnieszka Rybak et al.
Nature Cell Biology 11, 1411–1420
(December 2009); doi:10.1038/ncb1987
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news and views
TRIMming microRNA function in mouse stem cells
Anne Dueck & Gunter Meister
Nature Cell Biology 11, 1392–1393
(December 2009); doi:10.1038/ncb1209-1392
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November
article
Ago–TNRC6 triggers microRNA-mediated decay by promoting two deadenylation steps
Chyi-Ying A Chen, Dinghai Zheng, Zhenfang Xia & Ann-Bin Shyu
Nature Structural & Molecular Biology 16, 1160–1166
(November 2009); doi:10.1038/nsmb.1709
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article
An endogenous positively selecting peptide enhances mature T cell responses and becomes an autoantigen in the absence of microRNA miR-181a
Peter J R Ebert, Shan Jiang, Jianming Xie, Qi-Jing Li & Mark M Davis
Nature Immunology 10, 1162–1169
(November 2009); doi:10.1038/ni.1797
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news and views
Positively selecting peptides: their job does not end in the thymus
Kai W Wucherpfennig & Etienne Gagnon
Nature Immunology 10, 1143–1144
(November 2009); doi:10.1038/ni1109-1143
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October
letter
A regulatory circuit for piwi by the large Maf gene traffic jam in Drosophila
Kuniaki Saito et al.
Nature 461, 1296–1299
(29 October 2009); doi:10.1038/nature08501
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review
Causes and consequences of microRNA dysregulation in cancer
Carlo M. Croce
Nature Reviews Genetics 10, 704–714
(October 2009); doi:10.1038/nrg2634
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article
LIN-28 and the poly(U) polymerase PUP-2 regulate let-7 microRNA processing in Caenorhabditis elegans
Nicolas J Lehrbach et al.
Nature Structural & Molecular Biology 16, 1016–1020
(October 2009); doi:10.1038/nsmb.1675
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article
Lin28 recruits the TUTase Zcchc11 to inhibit let-7 maturation in mouse embryonic stem cells
John P Hagan, Elena Piskounova & Richard I Gregory
Nature Structural & Molecular Biology 16, 1021–1025
(October 2009); doi:10.1038/nsmb.1676
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brief communication
The non-coding RNA of the multidrug resistance-linked vault particle encodes multiple regulatory small RNAs
Helena Persson et al.
Nature Cell Biology 11, 1268–1271
(October 2009); doi:10.1038/ncb1972
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article
Large-scale sorting of C. elegans embryos reveals the dynamics of small RNA expression
Marlon Stoeckius et al.
Nature Methods 6, 745–751
(October 2009); doi:10.1038/nmeth.1370
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September
article
Existence of a microRNA pathway in anucleate platelets
Patricia Landry et al.
Nature Structural & Molecular Biology 16, 961–966
(September 2009); doi:10.1038/nsmb.1651
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letter
Multivesicular bodies associate with components of miRNA effector complexes and modulate miRNA activity
Derrick J. Gibbings, Constance Ciaudo, Mathieu Erhardt & Olivier Voinnet
Nature Cell Biology 11, 1143–1149
(September 2009); doi:10.1038/ncb1929
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letter
Silencing by small RNAs is linked to endosomal trafficking
Young Sik Lee et al.
Nature Cell Biology 11, 1150–1156
(September 2009); doi:10.1038/ncb1930
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news and views
RISC hitches onto endosome trafficking
Haruhiko Siomi & Mikiko C Siomi
Nature Cell Biology 11, 1049–1051
(September 2009); doi:10.1038/ncb0909-1049
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August
letter
MicroRNA MiR-17 retards tissue growth and represses fibronectin expression
Sze Wan Shan et al.
Nature Cell Biology 11, 1031–1038
(August 2009); doi:10.1038/ncb1917
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letter
A role for Lin28 in primordial germ-cell development and germ-cell malignancy
Jason A. West et al.
Nature 460, 909–913
(13 August 2009); doi:10.1038/nature08210
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article
miR-145 and miR-143 regulate smooth muscle cell fate and plasticity
Kimberly R. Cordes et al.
Nature 460, 705–710
(August 2009); doi:10.1038/nature08195
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July
letter
MicroRNA-mediated switching of chromatin-remodelling complexes in neural development
Andrew S. Yoo, Brett T. Staahl, Lei Chen & Gerald R. Crabtree
Nature 460, 642–646
(30 July 2009); doi:10.1038/nature08139
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article
Argonaute HITS-CLIP decodes microRNA–mRNA interaction maps
Sung Wook Chi, Julie B. Zang, Aldo Mele & Robert B. Darnell
Nature 460, 479–486
(23 July 2009); doi:10.1038/nature08170
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letter
Modulation of microRNA processing by p53
Hiroshi I. Suzuki et al.
Nature 460, 529–533
(23 July 2009); doi:10.1038/nature08199
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news and views
Cancer: Three birds with one stone
Franck Toledo & Boris Bardot
Nature 460, 466–467
(23 July 2009); doi:10.1038/460466a
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letter
Lin28 promotes transformation and is associated with advanced human malignancies
Srinivas R Viswanathan et al.
Nature Genetics 41, 843–848
(July 2009); doi:10.1038/ng.392
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news and views
Tumors line up for a letdown
Joshua T Mendell
Nature Genetics 41, 768–769
(July 2009); doi:10.1038/ng0709-768
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letter
TGF-β activates Akt kinase through a microRNA-dependent amplifying circuit targeting PTEN
Mitsuo Kato et al.
Nature Cell Biology 11, 881–889
(July 2009); doi:10.1038/ncb1897
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June
letter
A functional screen implicates microRNA-138-dependent regulation of the depalmitoylation enzyme APT1 in dendritic spine morphogenesis
Gabriele Siegel et al.
Nature Cell Biology 11, 705–716
(June 2009); doi:10.1038/ncb1876
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news and views
MicroRNA-mediated regulation of synaptic palmitoylation: shrinking fat spines
Damien Carrel & Bonnie L. Firestein
Nature Cell Biology 11, 681–682
(June 2009); doi:10.1038/ncb0609-681
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letter
The RNA-binding protein KSRP promotes the biogenesis of a subset of microRNAs
Michele Trabucchi et al.
Nature 459, 1010–1014
(18 June 2009); doi:10.1038/nature08025
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article
Loss of the Mili-interacting Tudor domain–containing protein-1 activates transposons and alters the Mili-associated small RNA profile
Michael Reuter et al.
Nature Structural & Molecular Biology 16, 639–646
(June 2009); doi:10.1038/nsmb.1615
| Summary | Full Text (HTML / PDF) |
May
brief communication
Embryonic stem cell–specific microRNAs promote induced pluripotency
Robert L Judson, Joshua E Babiarz, Monica Venere & Robert Blelloch
Nature Biotechnology 27, 459–461
(May 2009); doi:10.1038/nbt.1535
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article
miR-24–mediated downregulation of H2AX suppresses DNA repair in terminally differentiated blood cells
Ashish Lal et al.
Nature Structural & Molecular Biology 16, 492–498
(May 2009); doi:10.1038/nsmb.1589
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letter
Orally delivered siRNA targeting macrophage Map4k4 suppresses systemic inflammation
Myriam Aouadi et al.
Nature 458, 1180–1184
(30 April 2009); doi:10.1038/nature07774
| Summary | Full Text (HTML / PDF) |
April
article
Genome-wide analysis of Notch signalling in Drosophila by transgenic RNAi
Jennifer L. Mummery-Widmer et al.
Nature 458, 987–992
(23 April 2009); doi:10.1038/nature07936
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perspective
MicroRNAs — the micro steering wheel of tumour metastases
Milena S. Nicoloso, Riccardo Spizzo, Masayoshi Shimizu, Simona Rossi & George A. Calin
Nature Reviews Cancer 9, 293–302
(April 2009); doi:10.1038/nrc2619
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article
A feedback regulatory loop involving microRNA-9 and nuclear receptor TLX in neural stem cell fate determination
Chunnian Zhao, GuoQiang Sun, Shengxiu Li & Yanhong Shi
Nature Structural & Molecular Biology 16, 365–371
(April 2009); doi:10.1038/nsmb.1576
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news and views
miR-9 and TLX: chasing tails in neural stem cells
Ahmet M Denli, Xinwei Cao & Fred H Gage
Nature Structural & Molecular Biology 16, 346–347
(April 2009); doi:10.1038/nsmb0409-346
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article
miR-124 regulates adult neurogenesis in the subventricular zone stem cell niche
Li-Chun Cheng, Erika Pastrana, Masoud Tavazoie & Fiona Doetsch
Nature Neuroscience 12, 399–408
(April 2009); doi:10.1038/nn.2294
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news and views
Fine control: microRNA regulation of adult neurogenesis
Qin Shen & Sally Temple
Nature Neuroscience 12, 369–370
(April 2009); doi:10.1038/nn0409-369
| Full Text (HTML / PDF) |
March
letter
Antiviral immunity in Drosophila requires systemic RNA interference spread
Maria-Carla Saleh et al.
Nature 458, 346–350
(19 March 2009); doi:10.1038/nature07712
| Summary | Full Text (HTML / PDF) |
letter
Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals
Mitchell Guttman et al.
Nature 458, 223–227
(12 March 2009); doi:10.1038/nature07672
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letter
A TARBP2 mutation in human cancer impairs microRNA processing and DICER1 function
Sonia A Melo et al.
Nature Genetics 41, 365–370
(March 2009); doi:10.1038/ng.317
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February
article
Biological basis for restriction of microRNA targets to the 3′ untranslated region in mammalian mRNAs
Shuo Gu, Lan Jin, Feijie Zhang, Peter Sarnow & Mark A Kay
Nature Structural & Molecular Biology 16, 144–150
(February 2009); doi:10.1038/nsmb.1552
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review
Biogenesis of small RNAs in animals
V. Narry Kim, Jinju Han & Mikiko C. Siomi
Nature Reviews Molecular Cell Biology 10, 126–139
(February 2009); doi:10.1038/nrm2632
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review
Small silencing RNAs: an expanding universe
Megha Ghildiyal & Phillip D. Zamore
Nature Reviews Genetics 10, 94–108
(February 2009); doi:10.1038/nrg2504
| Summary | Full Text (HTML / PDF) |
review
MicroRNAs: key regulators of stem cells
Vamsi K. Gangaraju & Haifan Lin
Nature Reviews Molecular Cell Biology 10, 116–125
(February 2009); doi:10.1038/nrm2621
| Summary | Full Text (HTML / PDF) |
January
review
On the road to reading the RNA-interference code
Haruhiko Siomi & Mikiko C. Siomi
Nature 457, 396–404
(22 January 2009); doi:10.1038/nature07754
| Summary | Full Text (HTML / PDF) |
review
A three-dimensional view of the molecular machinery of RNA interference
Martin Jinek & Jennifer A. Doudna
Nature 457, 405–412
(22 January 2009); doi:10.1038/nature07755
| Summary | Full Text (HTML / PDF) |
review
Small RNAs in transcriptional gene silencing and genome defence
Danesh Moazed
Nature 457, 413–420
(22 January 2009); doi:10.1038/nature07756
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review
Viral and cellular messenger RNA targets of viral microRNAs
Bryan R. Cullen
Nature 457, 421–425
(22 January 2009); doi:10.1038/nature07757
| Summary | Full Text (HTML / PDF) |
review
The promises and pitfalls of RNA-interference-based therapeutics
Daniela Castanotto & John J. Rossi
Nature 457, 426–433
(22 January 2009); doi:10.1038/nature07758
| Summary | Full Text (HTML / PDF) |
letter
Tandem array-based expression screens identify host mRNA targets of virus-encoded microRNAs
Joseph M Ziegelbauer, Christopher S Sullivan & Don Ganem
Nature Genetics 41, 130–134
(January 2009); doi:10.1038/ng.266
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news and views
Searching for targets of viral microRNAs
Denise Whitby
Nature Genetics 41, 7–8
(January 2009); doi:10.1038/ng0109-7
| Full Text (HTML / PDF) |
brief communication
Stable knockdown of microRNA in vivo by lentiviral vectors
Bernhard Gentner et al.
Nature Methods 6, 63–66
(January 2009); doi:10.1038/nmeth.1277
| Summary | Full Text (HTML / PDF) |
article
ADAR1 is essential for the maintenance of hematopoiesis and suppression of interferon signaling
Jochen C Hartner, Carl R Walkley, Jun Lu & Stuart H Orkin
Nature Immunology 10, 109–115
(January 2009); doi:10.1038/ni.1680
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news and views
A new function for the RNA-editing enzyme ADAR1
Hisashi Iizasa & Kazuko Nishikura
Nature Immunology 10, 16–18
(January 2009); doi:10.1038/ni0109-16
| Full Text (HTML / PDF) |
article
miR-29 miRNAs activate p53 by targeting p85α and CDC42
Seong-Yeon Park, Jung Hyun Lee, Minju Ha, Jin-Wu Nam & V Narry Kim
Nature Structural & Molecular Biology 16, 23–29
(January 2009); doi:10.1038/nsmb.1533
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