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Research library: Transcription/Chromatin

2005: December | November | September | August | July | June | May | April | March | February | January

Other Years: 2002 | 2003 | 2004 | 2006 | 2007 | 2008

letter
Histone H3 serine 10 phosphorylation by Aurora B causes HP1 dissociation from heterochromatin
Toru Hirota, Jesse J. Lipp, Ban-Hock Toh and Jan-Michael Peters
Nature 438, 1176–1180
(22 December 2005); doi:10.1038/nature04254
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letter
Double chromodomains cooperate to recognize the methylated histone H3 tail
John F. Flanagan, Li-Zhi Mi, Maksymilian Chruszcz, Marcin Cymborowski, Katrina L. Clines, Youngchang Kim, Wladek Minor, Fraydoon Rastinejad and Sepideh Khorasanizadeh
Nature 438, 1181–1185
(22 December 2005); doi:10.1038/nature04290
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letter
Prevention of early flowering by expression of FLOWERING LOCUS C requires methylation of histone H3 K36
Zhong Zhao, Yu Yu, Denise Meyer, Chengjun Wu and Wen-Hui Shen
Nature Cell Biology 7, 1256–1260
(December 2005); doi:10.1038/ncb1329
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Review article
Oncogenic PI3K deregulates transcription and translation
Andreas G. Bader, Sohye Kang, Li Zhao and Peter K. Vogt
Nature Reviews Cancer 5, 921–929
(December 2005); doi:10.1038/nrc1753
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letter
Differential role of CENP-A in the segregation of holocentric C. elegans chromosomes during meiosis and mitosis
Joost Monen, Paul S. Maddox, Francie Hyndman, Karen Oegema and Arshad Desai
Nature Cell Biology 7, 1248–1255
(December 2005); doi:10.1038/ncb1331
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article
The peptidyl-prolyl isomerase Pin1 regulates the stability of granulocyte-macrophage colony-stimulating factor mRNA in activated eosinophils
Zhong-Jian Shen, Stephane Esnault and James S Malter
Nature Immunology 6, 1280–1287
(December 2005); doi:10.1038/ni1266
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news and views
Pin1: a proline isomerase that makes you wheeze?
Paul Anderson
Nature Immunology 6, 1211–1212
(December 2005); doi:10.1038/ni1205-1211
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review article
A role for Kaiso-p120ctn complexes in cancer?
Frans M. van Roy and Pierre D. McCrea
Nature Reviews Cancer 5, 956–964
(December 2005); doi:10.1038/nrc1752
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article
Inhibiting Stat3 signaling in the hematopoietic system elicits multicomponent antitumor immunity
Marcin Kortylewski, Maciej Kujawski, Tianhong Wang, Sheng Wei, Shumin Zhang, Shari Pilon-Thomas, Guilian Niu, Heidi Kay, James Mulé, William G Kerr, Richard Jove, Drew Pardoll and Hua Yu
Nature Medicine 11, 1314–1321
(December 2005); doi:10.1038/nm1325
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letter
The microRNA miR-196 acts upstream of Hoxb8 and Shh in limb development
Eran Hornstein, Jennifer H. Mansfield, Soraya Yekta, Jimmy Kuang-Hsien Hu, Brian D. Harfe, Michael T. McManus, Scott Baskerville, David P. Bartel and Clifford J. Tabin
Nature 438, 671–674
(01 December 2005); doi:10.1038/nature04138
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letter
The APC/C and CBP/p300 cooperate to regulate transcription and cell-cycle progression
Andrew S. Turnell, Grant S. Stewart, Roger J. A. Grand, Susan M. Rookes, Ashley Martin, Hiroyuki Yamano, Stephen J. Elledge and Phillip H. Gallimore
Nature 438, 690–695
(01 December 2005); doi:10.1038/nature04151
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article
NMDA receptors regulate developmental gap junction uncoupling via CREB signaling
Harsha Arumugam, Xinhuai Liu, Paul J Colombo, Roderick A Corriveau and Andrei B Belousov
Nature Neuroscience 8, 1720–1726
(December 2005); doi:10.1038/nn1588
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news and views
Flipping the switch from electrical to chemical communication
Karl Kandler and Edda Thiels
Nature Neuroscience 8, 1633–1634
(December 2005); doi:10.1038/nn1205-1633
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letter
Direct observation of base-pair stepping by RNA polymerase
Elio A. Abbondanzieri, William J. Greenleaf, Joshua W. Shaevitz, Robert Landick and Steven M. Block
Nature 438, 460–465
(24 November 2005); doi:10.1038/nature04268
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letter
Evidence for de novo imprinted X-chromosome inactivation independent of meiotic inactivation in mice
Ikuhiro Okamoto, Danielle Arnaud, Patricia Le Baccon, Arie P. Otte, Christine M. Disteche, Philip Avner and Edith Heard
Nature 438, 369–373
(17 November 2005); doi:10.1038/nature04155
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letter
Chromatin remodelling at a DNA double-strand break site in Saccharomyces cerevisiae
Toyoko Tsukuda, Alastair B. Fleming, Jac A. Nickoloff and Mary Ann Osley
Nature 438, 379–383
(17 November 2005); doi:10.1038/nature04148
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article
Interleukin 17-producing CD4+ effector T cells develop via a lineage distinct from the T helper type 1 and 2 lineages
Laurie E Harrington, Robin D Hatton, Paul R Mangan, Henrietta Turner, Theresa L Murphy, Kenneth M Murphy and Casey T Weaver
Nature Immunology 6, 1123–1132
(November 2005); doi:10.1038/ni1254
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article
A distinct lineage of CD4 T cells regulates tissue inflammation by producing interleukin 17
Heon Park, Zhaoxia Li, Xuexian O Yang, Seon Hee Chang, Roza Nurieva, Yi-Hong Wang, Ying Wang, Leroy Hood, Zhou Zhu, Qiang Tian and Chen Dong
Nature Immunology 6, 1133–1141
(November 2005); doi:10.1038/ni1261
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news and views
TH-17: a giant step from TH1 and TH2
Thomas A Wynn
Nature Immunology 6, 1069–1070
(November 2005); doi:10.1038/ni1105-1069
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review article
The organization and inheritance of the mitochondrial genome
Xin Jie Chen and Ronald A. Butow
Nature Reviews Genetics 6, 815–825
(November 2005); doi:10.1038/nrg1708
Nature Reviews Genetics AOP published online
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article
The yeast Pif1p helicase removes telomerase from telomeric DNA
Jean-Baptiste Boulé, Leticia R. Vega and Virginia A. Zakian
Nature 438, 57–61
(03 November 2005); doi:10.1038/nature04091
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letter
The transcription factor Engrailed-2 guides retinal axons
Isabelle Brunet, Christine Weinl, Michael Piper, Alain Trembleau, Michel Volovitch, William Harris, Alain Prochiantz and Christine Holt
Nature 438, 94–98
(03 November 2005); doi:10.1038/nature04110
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letter
A putative stimulatory role for activator turnover in gene expression
J. Russell Lipford, Geoffrey T. Smith, Yong Chi and Raymond J. Deshaies
Nature 438, 113–116
(03 November 2005); doi:10.1038/nature04098
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letter
The histone H3.3 chaperone HIRA is essential for chromatin assembly in the male pronucleus
Benjamin Loppin, Emilie Bonnefoy, Caroline Anselme, Anne Laurençon, Timothy L. Karr and Pierre Couble
Nature 437, 1386–1390
(27 October 2005); doi:10.1038/nature04059
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article
BCL6 interacts with the transcription factor Miz-1 to suppress the cyclin-dependent kinase inhibitor p21 and cell cycle arrest in germinal center B cells
Ryan T Phan, Masumichi Saito, Katia Basso, Huifeng Niu and Riccardo Dalla-Favera
Nature Immunology 6, 1054–1060
(October 2005); doi:10.1038/ni1245
| Abstract | Full Text (HTML/PDF) |

news and views
A-Miz-ing BCL6
Xiaosheng Wu and Diane F Jelinek
Nature Immunology 6, 964–966
(October 2005); doi:10.1038/ni1005-964
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article
The CREB coactivator TORC2 is a key regulator of fasting glucose metabolism
Seung-Hoi Koo, Lawrence Flechner, Ling Qi, Xinmin Zhang, Robert A. Screaton, Shawn Jeffries, Susan Hedrick, Wu Xu, Fayçal Boussouar, Paul Brindle, Hiroshi Takemori and Marc Montminy
Nature 437, 1109–11
(20 October 2005); doi:10.1038/nature03967
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review article
Regulation of MHC class II gene expression by the class II transactivator
Walter Reith, Salomé LeibundGut-Landmann and Jean-Marc Waldburger
Nature Reviews Immunology 5, 793–806
(October 2005); doi:10.1038/nri1708
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letter
A network-based analysis of systemic inflammation in humans
Steve E. Calvano, Wenzhong Xiao, Daniel R. Richards, Ramon M. Felciano, Henry V. Baker, Raymond J. Cho, Richard O. Chen, Bernard H. Brownstein, J. Perren Cobb, S. Kevin Tschoeke, Carol Miller-Graziano, Lyle L. Moldawer, Michael N. Mindrinos, Ronald W. Davis, Ronald G. Tompkins, Stephen F. Lowry and Inflamm and Host Response to Injury Large Scale Collab. Res. Program
Nature 437, 1032–1037
(13 October 2005); doi:10.1038/nature03985
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letter
Retraction: RNA-interference-directed chromatin modification coupled to RNA polymerase II transcription
Vera Schramke, Daniel M. Sheedy, Ahmet M. Denli, Carolina Bonila, Karl Ekwall, Gregory J. Hannon and Robin C. Allshire
Nature 437, 1057
(13 October 2005); doi:10.1038/nature04181
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article
IPS-1, an adaptor triggering RIG-I- and Mda5-mediated type I interferon induction
Taro Kawai, Ken Takahashi, Shintaro Sato, Cevayir Coban, Himanshu Kumar, Hiroki Kato, Ken J Ishii, Osamu Takeuchi and Shizuo Akira
Nature Immunology 6, 981–988
(October 2005); doi:10.1038/ni1243
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news and views
'PPAR'ting ways with inflammation
Shannon T Bailey and Sankar Ghosh
Nature Immunology 6, 966–967
(October 2005); doi:10.1038/ni1005-966
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review article
The role of chromatin structure in regulating the expression of clustered genes
Duncan Sproul, Nick Gilbert and Wendy A. Bickmore
Nature Reviews Genetics 6, 775–781
(October 2005); doi:10.1038/nrg1688
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letter
A SUMOylation-dependent pathway mediates transrepression of inflammatory response genes by PPAR-γ
Gabriel Pascual, Amy L. Fong, Sumito Ogawa, Amir Gamliel, Andrew C. Li, Valentina Perissi, David W. Rose, Timothy M. Willson, Michael G. Rosenfeld and Christopher K. Glass
Nature 437, 759–763
(29 September 2005); doi:10.1038/nature03988
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letter
Genome-wide analysis of mouse transcripts using exon microarrays and factor graphs
Brendan J Frey, Naveed Mohammad, Quaid D Morris, Wen Zhang, Mark D Robinson, Sanie Mnaimneh, Richard Chang, Qun Pan, Eric Sat, Janet Rossant, Benoit G Bruneau, Jane E Aubin, Benjamin J Blencowe and Timothy R Hughes
Nature Genetics 37, 991–996
(September 2005); doi:10.1038/ng1630
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article
Regulated degradation of replication-dependent histone mRNAs requires both ATR and Upf1
Handan Kaygun and William F Marzluff
Nature Structural and Molecular Biology 12, 794–800
(September 2005); doi:10.1038/nsmb972
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article
Psoriasis-like skin disease and arthritis caused by inducible epidermal deletion of Jun proteins
Rainer Zenz, Robert Eferl, Lukas Kenner, Lore Florin, Lars Hummerich, Denis Mehic, Harald Scheuch, Peter Angel, Erwin Tschachler and Erwin F. Wagner
Nature 437, 369–375
(15 September 2005); doi:10.1038/nature03963
| Abstract | Full Text (HTML / PDF) |

letter
An essential role for CoREST in nucleosomal histone 3 lysine 4 demethylation
Min Gyu Lee, Christopher Wynder, Neil Cooch and Ramin Shiekhattar
Nature 437, 432–435
(15 September 2005); doi:10.1038/nature04021
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letter
LSD1 demethylates repressive histone marks to promote androgen-receptor-dependent transcription
Eric Metzger, Melanie Wissmann, Na Yin, Judith M. Müller, Robert Schneider, Antoine H. F. M. Peters, Thomas Günther, Reinhard Buettner and Roland Schüle
Nature 437, 436–439
(15 September 2005); doi:10.1038/nature04020
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brief communication
Distinct roles of IκB proteins in regulating constitutive NF-kB activity
Vinay Tergaonkar, Ricardo G Correa, Masahito Ikawa and Inder M Verma
Nature Cell Biology 7, 921–923
(September 2005); doi:10.1038/ncb1296
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letter
Interaction of phosphorylated c-Jun with TCF4 regulates intestinal cancer development
Abdolrahman S. Nateri, Bradley Spencer-Dene and Axel Behrens
Nature 437, 281–285
(08 September 2005); doi:10.1038/nature03914
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article
Hyperactivation of Stat3 in gp130 mutant mice promotes gastric hyperproliferation and desensitizes TGF-β signaling
Brendan J Jenkins, Dianne Grail, Thao Nheu, Meri Najdovska, Bo Wang, Paul Waring, Melissa Inglese, Rachel M McLoughlin, Simon A Jones, Nicholas Topley, Heinz Baumann, Louise M Judd, Andrew S Giraud, Alex Boussioutas, Hong-Jian Zhu and Matthias Ernst
Nature Medicine 11, 845–852
(August 2005); doi:10.1038/nm1282
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letter
Short double-stranded RNA induces transcriptional gene silencing in human cancer cells in the absence of DNA methylation
Angela H Ting, Kornel E Schuebel, James G Herman and Stephen B Baylin
Nature Genetics 37, 906–910
(August 2005); doi:10.1038/ng1611
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article
Real-time imaging of ligand-induced IKK activation in intact cells and in living mice
Shimon Gross and David Piwnica-Worms
Nature Methods 2, 607–614
(August 2005); doi:10.1038/nmeth779
| Abstract | Full Text (HTML/PDF) |

review article
Transcriptional regulation and transformation by Myc proteins
Sovana Adhikary and Martin Eilers
Nature Reviews Molecular Cell Biology 6, 635–645
(August 2005); doi:10.1038/nrm1703
| Summary | Full Text (HTML / PDF) |

review article
Regulation of gene-activation pathways by PIAS proteins in the immune system
Ke Shuai and Bin Liu
Nature Reviews Immunology 5, 593–605
(August 2005); doi:10.1038/nri1667
| Summary | Full Text (HTML / PDF) |

letter
ERM is required for transcriptional control of the spermatogonial stem cell niche
Chen Chen, Wenjun Ouyang, Vadim Grigura, Qing Zhou, Kay Carnes, Hyunjung Lim, Guang-Quan Zhao, Silvia Arber, Natasza Kurpios, Theresa L. Murphy, Alec M. Cheng, John A. Hassell, Varadaraj Chandrashekar, Marie-Claude Hofmann, Rex A. Hess and Kenneth M. Murphy
Nature 436, 1030–1034
(18 August 2005); doi:10.1038/nature03894
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letter
Deficiency of glutaredoxin 5 reveals Fe-S clusters are required for vertebrate haem synthesis
Rebecca A. Wingert, Jenna L. Galloway, Bruce Barut, Helen Foott, Paula Fraenkel, Jennifer L. Axe, Gerhard J. Weber, Kimberly Dooley, Alan J. Davidson, Bettina Schmidt, Barry H. Paw, George C. Shaw, Paul Kingsley, James Palis, Heidi Schubert, Opal Chen, Jerry Kaplan, The Tübingen 2000 Screen Consortium and Leonard I. Zon
Nature 436, 1035–1039
(18 August 2005); doi:10.1038/nature03887
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letter
Conditional telomerase induction causes proliferation of hair follicle stem cells
Kavita Y. Sarin, Peggie Cheung, Daniel Gilison, Eunice Lee, Ruth I. Tennen, Estee Wang, Maja K. Artandi, Anthony E. Oro and Steven E. Artandi
Nature 436, 1048–1052
(18 August 2005); doi:10.1038/nature03836
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news and views
Cell biology: Shaggy mouse tales
Elizabeth H. Blackburn
Nature 436, 922–923
(18 August 2005); doi:10.1038/436922a
| Full Text (HTML / PDF) |

letter
A high-resolution map of active promoters in the human genome
Tae Hoon Kim, Leah O. Barrera, Ming Zheng, Chunxu Qu, Michael A. Singer, Todd A. Richmond, Yingnian Wu, Roland D. Green and Bing Ren
Nature 436, 876–880
(11 August 2005); doi:10.1038/nature03877
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letter
Transcription of mammalian messenger RNAs by a nuclear RNA polymerase of mitochondrial origin
Julia E. Kravchenko, Igor B. Rogozin, Eugene V. Koonin and Peter M. Chumakov
Nature 436, 735–739
(04 August 2005); doi:10.1038/nature03848
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letter
TRBP recruits the Dicer complex to Ago2 for microRNA processing and gene silencing
Thimmaiah P. Chendrimada, Richard I. Gregory, Easwari Kumaraswamy , Jessica Norman, Neil Cooch, Kazuko Nishikura and Ramin Shiekhattar
Nature 436, 740–744
(04 August 2005); doi:10.1038/nature03868
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letter
MicroRNA-dependent localization of targeted mRNAs to mammalian P-bodies
Jidong Liu, Marco Antonio Valencia-Sanchez, Gregory J. Hannon and Roy Parker
Nature Cell Biology 7, 719–723
(July 2005); doi:10.1038/ncb1274
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news and views
RNAi and the P-body connection
John J. Rossi
Nature Cell Biology 7, 643–644
(July 2005); doi:10.1038/ncb0705-643
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article
Lack of the architectural factor HMGA1 causes insulin resistance and diabetes in humans and mice
Daniela Foti, Eusebio Chiefari, Monica Fedele, Rodolfo Iuliano, Leonardo Brunetti, Francesco Paonessa, Guidalberto Manfioletti, Fabrizio Barbetti, Arturo Brunetti, Carlo M Croce, Alfredo Fusco and Antonio Brunetti
Nature Medicine 11, 765–773
(July 2005); doi:10.1038/nm1254
| Abstract | Full Text (HTML/PDF) |

letter
DNA processing is not required for ATM-mediated telomere damage response after TRF2 deletion
Giulia B. Celli and Titia de Lange
Nature Cell Biology 7, 712–718
(July 2005); doi:10.1038/ncb1275
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article
Inhibitors of γ-secretase block in vivo and in vitro T helper type 1 polarization by preventing Notch upregulation of Tbx21
Lisa M Minter, Danielle M Turley, Pritam Das, Hyun Mu Shin, Ila Joshi, Rebecca G Lawlor, Ok Hyun Cho, Tanapat Palaga, Sridevi Gottipati, Janice C Telfer, Lisa Kostura, Abdul H Fauq, Katherine Simpson, Kimberly A Such, Lucio Miele, Todd E Golde, Stephen D Miller and Barbara A Osborne
Nature Immunology 6, 680–688
(July 2005); doi:10.1038/ni1209
| Abstract | Full Text (HTML/PDF) |

news and views
Notch in lymphopoiesis and T cell polarization
Harald von Boehmer
Nature Immunology 6, 641–642
(July 2005); doi:10.1038/ni0705-641
| Full Text (HTML/PDF) |

review article
Controlling nuclear receptors: the circular logic of cofactor cycles
Valentina Perissi and Michael G. Rosenfeld
Nature Reviews Molecular Cell Biology 6, 542–554
(July 2005); doi:10.1038/nrm1680
| Summary | Full Text (HTML / PDF) |

letter
RNA-interference-directed chromatin modification coupled to RNA polymerase II transcription
Vera Schramke, Daniel M. Sheedy, Ahmet M. Denli, Carolina Bonila, Karl Ekwall, Gregory J. Hannon and Robin C. Allshire
Nature 435, 1275–1279
(30 June 2005); doi:10.1038/nature03652
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news and views
Gene regulation: Expression and silencing coupled
Stephen Buratowski and Danesh Moazed
Nature 435, 1174–1175
(30 June 2005); doi:10.1038/4351174b
| Full Text (HTML / PDF) |

letter
Argonaute 2/RISC resides in sites of mammalian mRNA decay known as cytoplasmic bodies
George L. Sen and Helen M. Blau
Nature Cell Biology 7, 633–636
(June 2005); doi:10.1038/ncb1265
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article
Stat3 is required for ALK-mediated lymphomagenesis and provides a possible therapeutic target
Roberto Chiarle, William J Simmons, Honjying Cai, Girish Dhall, Alberto Zamo, Regina Raz, James G Karras, David E Levy and Giorgio Inghirami
Nature Medicine 11, 623–629
(June 2005); doi:10.1038/nm1249
| Abstract | Full Text (HTML/PDF) |

news and views
Validating Stat3 in cancer therapy
James E Darnell Jr
Nature Medicine 11, 595–596
(June 2005); doi:10.1038/nm0605-595
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article
Calmodulin-dependent protein kinase IV regulates nuclear export of Cabin1 during T-cell activation
Fan Pan, Anthony R Means and Jun O Liu
The EMBO Journal 24, 2104–2113
(June 2005); doi:10.1038/sj.emboj.7600685
| Abstract | Full Text (HTML/PDF) |

letter
Stem cell division is regulated by the microRNA pathway
S. D. Hatfield, H. R. Shcherbata, K. A. Fischer, K. Nakahara, R. W. Carthew and H. Ruohola-Baker
Nature 435, 974–978
(16 June 2005); doi:10.1038/nature03816
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letter
Inflammatory arthritis requires Foxo3a to prevent Fas ligand-induced neutrophil apoptosis
Helena Jonsson, Paul Allen and Stanford L Peng
Nature Medicine 11, 666–671
(June 2005); doi:10.1038/nm1248
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news and views
A fork in the pathway to inflammation and arthritis
Foo Y Liew and Iain B McInnes
Nature Medicine 11, 601–602
(June 2005); doi:10.1038/nm0605-601
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article
LINGO-1 negatively regulates myelination by oligodendrocytes
Sha Mi, Robert H Miller, Xinhua Lee, Martin L Scott, Svetlane Shulag-Morskaya, Zhaohui Shao, Jufang Chang, Greg Thill, Melissa Levesque, Mingdi Zhang, Cathy Hession, Dinah Sah, Bruce Trapp, Zhigang He, Vincent Jung, John M McCoy and R Blake Pepinsky
Nature Neuroscience 8, 745–751
(June 2005); doi:10.1038/nn1460
| Abstract | Full Text (HTML/PDF) |

article
A newly discovered function for RNase L in regulating translation termination
Florence Le Roy, Tamim Salehzada, Catherine Bisbal, Joseph P Dougherty and Stuart W Peltz
Nature Structural and Molecular Biology 12, 505–512
(June 2005); doi:10.1038/nsmb944
| Abstract | Full Text (HTML/PDF) |

news and views
The end justifies the means
Allan Jacobson
Nature Structural and Molecular Biology 12, 474–475
(June 2005); doi:10.1038/nsmb0605-474
| Full Text (HTML/PDF) |

letter
A microRNA polycistron as a potential human oncogene
Lin He, J. Michael Thomson, Michael T. Hemann, Eva Hernando-Monge, David Mu, Summer Goodson, Scott Powers, Carlos Cordon-Cardo, Scott W. Lowe, Gregory J. Hannon and Scott M. Hammond
Nature 435, 828–833
(09 June 2005); doi:10.1038/nature03552
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letter
c-Myc-regulated microRNAs modulate E2F1 expression
Kathryn A. O'Donnell, Erik A. Wentzel, Karen I. Zeller, Chi V. Dang and Joshua T. Mendell
Nature 435, 839–843
(09 June 2005); doi:10.1038/nature03677
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news and views
Cancer genomics: Small RNAs with big impacts
Paul S. Meltzer
Nature 435, 745–746
(09 June 2005); doi:10.1038/435745a
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article
Prediction of preadipocyte differentiation by gene expression reveals role of insulin receptor substrates and necdin
Yu-Hua Tseng, Atul J. Butte, Efi Kokkotou, Vijay K. Yechoor, Cullen M. Taniguchi, Kristina M. Kriauciunas, Aaron M. Cypess, Michio Niinobe, Kazuaki Yoshikawa, Mary Elizabeth Patti and C. Ronald Kahn
Nature Cell Biology 7, 601–611
(June 2005); doi:10.1038/ncb1259
| Abstract | Full Text (HTML/PDF) |

news and views
Fickle factor foils fat fate
Ormond A. MacDougald and Charles F. Burant
Nature Cell Biology 7, 543–545
(June 2005); doi:10.1038/ncb0605-543
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research article
Systemic Agrobacterium tumefaciens-mediated transfection of viral replicons for efficient transient expression in plants
Sylvestre Marillonnet, Carola Thoeringer, Romy Kandzia, Victor Klimyuk and Yuri Gleba
Nature Biotechnology 23, 718–723
(June 2005); doi:10.1038/nbt1094
| Abstract | Full Text (HTML/PDF) |

news and views
Viral-mediated plant transformation gets a boost
Stanton B Gelvin
Nature Biotechnology 23, 684–685
(June 2005); doi:10.1038/nbt0605-684
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review article
Control of lymphocyte development by nuclear factor-κB
Ulrich Siebenlist, Keith Brown and Estefania Claudio
Nature Reviews Immunology 5, 435–445
(June 2005); doi:10.1038/nri1629
| Summary | Full Text (HTML / PDF) |

analysis
Mining for regulatory programs in the cancer transcriptome
Daniel R Rhodes, Shanker Kalyana-Sundaram, Vasudeva Mahavisno, Terrence R Barrette, Debashis Ghosh and Arul M Chinnaiyan
Nature Genetics 37, 579–583
(June 2005); doi:10.1038/ng1578
| Abstract | Full Text (HTML/PDF) |

article
SRF mediates activity-induced gene expression and synaptic plasticity but not neuronal viability
Narendrakumar Ramanan, Ying Shen, Sarah Sarsfield, Thomas Lemberger, Günther Schütz, David J Linden and David D Ginty
Nature Neuroscience 8, 759–767
(June 2005); doi:10.1038/nn1462
| Abstract | Full Text (HTML/PDF) |

article
The RISC subunit Tudor-SN binds to hyper-edited double-stranded RNA and promotes its cleavage
A D J Scadden
Nature Structural and Molecular Biology 12, 489–496
(June 2005); doi:10.1038/nsmb936
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review article
Process or perish: quality control in mRNA biogenesis
Milo B Fasken and Anita H Corbett
Nature Structural and Molecular Biology 12, 482–488
(June 2005); doi:10.1038/nsmb945
| Abstract | Full Text (HTML/PDF) |

article
The F-box protein TIR1 is an auxin receptor
Nihal Dharmasiri, Sunethra Dharmasiri and Mark Estelle
Nature 435, 441–445
(26 May 2005); doi:10.1038/nature03543
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article
The Arabidopsis F-box protein TIR1 is an auxin receptor
Stefan Kepinski and Ottoline Leyser
Nature 435, 446–451
(26 May 2005); doi:10.1038/nature03542
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Plant biology: Auxin action
Judy Callis
Nature 435, 436–437
(26 May 2005); doi:10.1038/435436b
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article
Lineage infidelity of epithelial ovarian cancers is controlled by HOX genes that specify regional identity in the reproductive tract
Wenjun Cheng, Jinsong Liu, Hiroyuki Yoshida, Daniel Rosen and Honami Naora
Nature Medicine 11, 531–537
(May 2005); doi:10.1038/nm1230
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review article
The RUNX genes: gain or loss of function in cancer
Karen Blyth, Ewan R. Cameron and James C. Neil
Nature Reviews Cancer 5, 376–387
(2005) doi:10.1038/nrc1607
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The Mesp2 transcription factor establishes segmental borders by suppressing Notch activity
Mitsuru Morimoto, Yu Takahashi, Maho Endo and Yumiko Saga
Nature 435, 354–359
(19 May 2005); doi:10.1038/nature03591
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article
Retinoic acid signalling links left-right asymmetric patterning and bilaterally symmetric somitogenesis in the zebrafish embryo
Yasuhiko Kawakami, Ángel Raya, R. Marina Raya, Concepción Rodríguez-Esteban and Juan Carlos Izpisúa Belmonte
Nature 435, 165–171
(12 May 2005); doi:10.1038/nature03512
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Developmental biology: Asymmetrical threat averted
Eran Hornstein and Clifford J. Tabin
Nature 435, 155–156
(12 May 2005); doi:10.1038/435155a
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article
FGF-induced vesicular release of Sonic hedgehog and retinoic acid in leftward nodal flow is critical for left-right determination
Yosuke Tanaka, Yasushi Okada and Nobutaka Hirokawa
Nature 435, 172–177
(12 May 2005); doi:10.1038/nature03494
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letters to nature
Retinoic acid coordinates somitogenesis and left-right patterning in vertebrate embryos
Julien Vermot and Olivier Pourquié
′Nature 435, 215–220
(12 May 2005); doi:10.1038/nature03488
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article
Epistasis analysis with global transcriptional phenotypes
Nancy Van Driessche, Janez Demsar, Ezgi O Booth, Paul Hill, Peter Juvan, Blaz Zupan, Adam Kuspa and Gad Shaulsky
Nature Genetics 37, 471–477
(May 2005); doi:10.1038/ng1545
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Universal epistasis analysis
Timothy R Hughes
Nature Genetics 37, 457–458
(May 2005); doi:10.1038/ng0505-457
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letters to nature
Suppression of Notch signalling by the COUP-TFII transcription factor regulates vein identity
Li-Ru You, Fu-Jung Lin, Christopher T. Lee, Francesco J. DeMayo, Ming-Jer Tsai and Sophia Y. Tsai
Nature 435, 98–104
(05 May 2005); doi:10.1038/nature03511
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IRF-7 triggers the interferon alarm
Myrto Raftopoulou
Nature Cell Biology 7, 459
(May 2005); doi:10.1038/ncb0505-459
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review article
Interactions of NF-κB with chromatin: the art of being at the right place at the right time
Gioacchino Natoli, Simona Saccani, Daniela Bosisio and Ivan Marazzi
Nature Immunology 6, 439–445
(May 2005); doi:10.1038/ni1196
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article
A positive autoregulatory loop of Jak-STAT signaling controls the onset of astrogliogenesis
Fei He, Weihong Ge, Keri Martinowich, Sara Becker-Catania, Volkan Coskun, Wenyu Zhu, Hao Wu, Diogo Castro, Francois Guillemot, Guoping Fan, Jean de Vellis and Yi E Sun
Nature Neuroscience 8, 616–625
(May 2005); doi:10.1038/nn1440
| Abstract | Full Text (HTML/PDF) |

article
Independence and reproducibility across microarray platforms
Jennie E Larkin, Bryan C Frank, Haralambos Gavras, Razvan Sultana and John Quackenbush
Nature Methods 2, 337–344
(May 2005); doi:10.1038/nmeth757
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article
Multiple-laboratory comparison of microarray platforms
Rafael A Irizarry, Daniel Warren, Forrest Spencer, Irene F Kim, Shyam Biswal, Bryan C Frank, Edward Gabrielson, Joe G N Garcia, Joel Geoghegan, Gregory Germino, Constance Griffin, Sara C Hilmer, Eric Hoffman, Anne E Jedlicka, Ernest Kawasaki, Francisco Martínez-Murillo, Laura Morsberger, Hannah Lee, David Petersen, John Quackenbush, Alan Scott, Michael Wilson, Yanqin Yang, Shui Qing Ye and Wayne Yu
Nature Methods 2, 345–350
(May 2005); doi:10.1038/nmeth756
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article
Standardizing global gene expression analysis between laboratories and across platforms
Members of the Toxicogenomics Research Consortium: B.K. Weis
Nature Methods 2, 351–356
(May 2005); doi:10.1038/nmeth754
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Of fish and chips
Gavin Sherlock
Nature Methods 2, 329–330
(May 2005); doi:10.1038/nmeth0505-329
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review article
Naturally arising Foxp3-expressing CD25+CD4+ regulatory T cells in immunological tolerance to self and non-self
Shimon Sakaguchi
Nature Immunology 6, 345–352
(April 2005); doi:10.1038/ni1178
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Role of the RB1 family in stabilizing histone methylation at constitutive heterochromatin
Susana Gonzalo, Marta García-Cao, Mario F. Fraga, Gunnar Schotta, Antoine H.F.M. Peters, Shane E. Cotter, Raúl Eguía, Douglas C. Dean, Manel Esteller, Thomas Jenuwein and María A. Blasco
Nature Cell Biology 7, 420–428
(April 2005); doi:10.1038/ncb1235
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article
The zinc finger protein cKrox directs CD4 lineage differentiation during intrathymic T cell positive selection
Guangping Sun, Xiaolong Liu, Peter Mercado, S Rhiannon Jenkinson, Magdalini Kypriotou, Lionel Feigenbaum, Philippe Galéra and Rémy Bosselut
Nature Immunology 6, 373–381
(April 2005); doi:10.1038/ni1183
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Switching sides: transcriptional control of CD4 thymocyte lineage commitment
Rose Zamoyska
Nature Immunology 6, 363–364
(April 2005); doi:10.1038/ni0405-363
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Staufen does double duty
Erika L Meyer and Elizabeth R Gavis
Nature Structural and Molecular Biology 12, 291–292
(April 2005); doi:10.1038/nsmb0405-291
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Transcriptional regulation of a metastasis suppressor gene by Tip60 and β-catenin complexes
Jung Hwa Kim, Bogyou Kim, Ling Cai, Hee June Choi, Kenneth A. Ohgi, Chris Tran, Charlie Chen, Chin Ha Chung, Otmar Huber, David W. Rose, Charles L. Sawyers, Michael G. Rosenfeld and Sung Hee Baek
Nature 434, 921–926
(14 April 2005); doi:10.1038/nature03452
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Stat3-induced apoptosis requires a molecular switch in PI(3)K subunit composition
Kathrine Abell, Antonio Bilancio, Richard W. E. Clarkson, Paul G. Tiffen, Anton I. Altaparmakov, Thomas G. Burdon, Tomoichiro Asano, Bart Vanhaesebroeck and Christine J. Watson
Nature Cell Biology 7, 392–398
(April 2005); doi:10.1038/ncb1242
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review article
Mechanisms of suppression by suppressor T cells
Harald von Boehmer
Nature Immunology 6, 338–344
(April 2005); doi:10.1038/ni1180
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review article
High-mobility group box 1 protein (HMGB1): nuclear weapon in the immune arsenal
Michael T. Lotze and Kevin J. Tracey
Nature Reviews Immunology 5, 331–342
(April 2005); doi:10.1038/nri1594
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article
Altered Twist1 and Hand2 dimerization is associated with Saethre-Chotzen syndrome and limb abnormalities
Beth A Firulli, Dayana Krawchuk, Victoria E Centonze, Neil Vargesson, David M Virshup, Simon J Conway, Peter Cserjesi, Ed Laufer and Anthony B Firulli
Nature Genetics 37, 373–381
(April 2005); doi:10.1038/ng1525
| Abstract | Full Text (HTML/PDF) |

article
β-catenin directly displaces Groucho/TLE repressors from Tcf/Lef in Wnt-mediated transcription activation
Danette L Daniels and William I Weis
Nature Structural and Molecular Biology 12, 364–371
(April 2005); doi:10.1038/nsmb912
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IRF-7 is the master regulator of type-I interferon-dependent immune responses
Kenya Honda, Hideyuki Yanai, Hideo Negishi, Masataka Asagiri, Mitsuharu Sato, Tatsuaki Mizutani, Naoya Shimada, Yusuke Ohba, Akinori Takaoka, Nobuaki Yoshida and Tadatsugu Taniguchi
Nature 434, 772–777
(07 April 2005); doi:10.1038/nature03464
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review article
A well adapted regulatory contrivance: regulatory T cell development and the forkhead family transcription factor Foxp3
Jason D Fontenot and Alexander Y Rudensky
Nature Immunology 6, 331–337
(April 2005); doi:10.1038/ni1179
| Abstract | Full Text (HTML/PDF) |

article
Purified Argonaute2 and an siRNA form recombinant human RISC
Fabiola V Rivas, Niraj H Tolia, Ji-Joon Song, Juan P Aragon, Jidong Liu, Gregory J Hannon and Leemor Joshua-Tor
Nature Structural and Molecular Biology 12, 340–349
(April 2005); doi:10.1038/nsmb918
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article
Identification of microRNAs of the herpesvirus family
Sébastien Pfeffer, Alain Sewer, Mariana Lagos-Quintana, Robert Sheridan, Chris Sander, Friedrich A Grässer, Linda F van Dyk, C Kiong Ho, Stewart Shuman, Minchen Chien, James J Russo, Jingyue Ju, Glenn Randall, Brett D Lindenbach, Charles M Rice, Viviana Simon, David D Ho, Mihaela Zavolan and Thomas Tuschl
Nature Methods 2, 269–276
(April 2005); doi:10.1038/nmeth746
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Herpesviruses throw a curve ball: new insights into microRNA biogenesis and evolution
Joel R Neilson & Phillip A Sharp
Nature Methods 2, 252–254
(April 2005); doi:10.1038/nmeth0405-252
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letters to nature
Structural insights into mRNA recognition from a PIWI domain-siRNA guide complex
James S. Parker, S. Mark Roe and David Barford
Nature 434, 663–666
(31 March 2005); doi:10.1038/nature03462
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letters to nature
Structural basis for 5'-end-specific recognition of guide RNA by the A. fulgidus Piwi protein
Jin-Biao Ma, Yu-Ren Yuan, Gunter Meister, Yi Pei, Thomas Tuschl and Dinshaw J. Patel
Nature 434, 666–670
(31 March 2005); doi:10.1038/nature03514
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review article
Thinking quantitatively about transcriptional regulation
Sandra J. Greive and Peter H. von Hippel
Nature Reviews Molecular Cell Biology 6, 221–232
(March 2005); doi:10.1038/nrm1588
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review article
Induction and suppression of RNA silencing: insights from viral infections
Olivier Voinnet
Nature Reviews Genetics 6, 206–220
(March 2005); doi:10.1038/nrg1555
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RecA kicks Pol V into gear
Joann B Sweasy
Nature Structural and Molecular Biology 12, 215–216
(March 2005); doi:10.1038/nsmb0305-215
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letters to nature
Leptin regulation of bone resorption by the sympathetic nervous system and CART
Florent Elefteriou , Jong Deok Ahn, Shu Takeda , Michael Starbuck, Xiangli Yang, Xiuyun Liu, Hisataka Kondo, William G. Richards, Tony W. Bannon, Masaki Noda, Karine Clement, Christian Vaisse and Gerard Karsenty
Nature 434, 514–520
(24 March 2005); doi:10.1038/nature03398
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Physiology: Do neural signals remodel bone?
Joel K. Elmquist and Gordon J. Strewler
Nature 434, 447–448
(24 March 2005); doi:10.1038/434447a
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letters to nature
Recruitment of Drosophila Polycomb group proteins to chromatin by DSP1
Jérôme Déjardin, Aurélien Rappailles, Olivier Cuvier, Charlotte Grimaud, Martine Decoville, Daniel Locker and Giacomo Cavalli
Nature 434, 533–538
(24 March 2005); doi:10.1038/nature03386
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article
G-CSF prevents cardiac remodeling after myocardial infarction by activating the Jak-Stat pathway in cardiomyocytes
Mutsuo Harada, Yingjie Qin, Hiroyuki Takano, Tohru Minamino, Yunzeng Zou, Haruhiro Toko, Masashi Ohtsuka, Katsuhisa Matsuura, Masanori Sano, Jun-ichiro Nishi, Koji Iwanaga, Hiroshi Akazawa, Takeshige Kunieda, Weidong Zhu, Hiroshi Hasegawa, Keita Kunisada, Toshio Nagai, Haruaki Nakaya, Keiko Yamauchi-Takihara and Issei Komuro
Nature Medicine 11, 305–311
(March 2005); doi:10.1038/nm1199
| Abstract | Full Text (HTML/PDF) |

article
Inhibition of indoleamine 2,3-dioxygenase, an immunoregulatory target of the cancer suppression gene Bin1, potentiates cancer chemotherapy
Alexander J Muller, James B DuHadaway, P Scott Donover, Erika Sutanto-Ward and George C Prendergast
Nature Medicine 11, 312–319
(March 2005); doi:10.1038/nm1196
| Abstract | Full Text (HTML/PDF) |

article
Brahma links the SWI/SNF chromatin-remodeling complex with MeCP2-dependent transcriptional silencing
Harikrishnan K N, Maggie Z Chow, Emma K Baker, Sharmistha Pal, Sahar Bassal, Daniella Brasacchio, Li Wang, Jeff M Craig, Peter L Jones, Saïd Sif and Assam El-Osta
Nature Genetics 37, 254–264
(March 2005); doi:10.1038/ng1516
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SWItching off methylated DNA
Paul A Wade
Nature Genetics 37, 212–213
(March 2005); doi:10.1038/ng0305-212
| Full Text (HTML/PDF) |

article
Directed differentiation of telencephalic precursors from embryonic stem cells
Kiichi Watanabe, Daisuke Kamiya, Ayaka Nishiyama, Tomoko Katayama, Satoshi Nozaki, Hiroshi Kawasaki, Yasuyoshi Watanabe, Kenji Mizuseki and Yoshiki Sasai
Nature Neuroscience 8, 288–296
(March 2005); doi:10.1038/nn1402
| Abstract | Full Text (HTML/PDF) |

letter
Myc-dependent regulation of ribosomal RNA synthesis during Drosophila development
Savraj S. Grewal, Ling Li, Amir Orian, Robert N. Eisenman and Bruce A. Edgar
Nature Cell Biology 7, 295–302
(March 2005); doi:10.1038/ncb1223
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c-Myc associates with ribosomal DNA and activates RNA polymerase I transcription
Azadeh Arabi, Siqin Wu, Karin Ridderstråle, Holger Bierhoff, Chiounan Shiue, Karoly Fatyol, Sara Fahlén, Per Hydbring, Ola Söderberg, Ingrid Grummt, Lars-Gunnar Larsson and Anthony P. H. Wright
Nature Cell Biology 7, 303–310
(March 2005); doi:10.1038/ncb1225
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c-Myc binds to human ribosomal DNA and stimulates transcription of rRNA genes by RNA polymerase I
Carla Grandori, Natividad Gomez-Roman, Zoe A. Felton-Edkins, Celine Ngouenet, Denise A. Galloway, Robert N. Eisenman and Robert J. White
Nature Cell Biology 7, 311–318
(March 2005); doi:10.1038/ncb1224
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The Myc trilogy: lord of RNA polymerases
Thordur Oskarsson and Andreas Trumpp
Nature Cell Biology 7, 215–217
(March 2005); doi:10.1038/ncb0305-215
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review article
Regulation of plasma-cell development
Miriam Shapiro-Shelef and Kathryn Calame
Nature Reviews Immunology 5, 230–242
(March 2005); doi:10.1038/nri1572
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article
Histone deacetylase 9 couples neuronal activity to muscle chromatin acetylation and gene expression
Alexandre Méjat, Francis Ramond, Rhonda Bassel-Duby, Saadi Khochbin, Eric N Olson and Laurent Schaeffer
Nature Neuroscience 8, 313–321
(March 2005); doi:10.1038/nn1408
| Abstract | Full Text (HTML/PDF) |

research article
Programmable ligand-controlled riboregulators of eukaryotic gene expression
Travis S Bayer and Christina D Smolke
Nature Biotechnology 23, 337–343
(March 2005); doi:10.1038/nbt1069
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Plug-and-play with RNA
Farren J Isaacs and James J Collins
Nature Biotechnology 23, 306–307
(March 2005); doi:10.1038/nbt0305-306
| Full Text (HTML/PDF) |

letters to nature
Integral role of IRF-5 in the gene induction programme activated by Toll-like receptors
Akinori Takaoka, Hideyuki Yanai, Seiji Kondo, Gordon Duncan, Hideo Negishi, Tatsuaki Mizutani, Shin-ichi Kano, Kenya Honda, Yusuke Ohba, Tak W. Mak and Tadatsugu Taniguchi
Nature 434, 243–249
(10 March 2005); doi:10.1038/nature03308
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article
STAT5 regulates the self-renewal capacity and differentiation of human memory B cells and controls Bcl-6 expression
Ferenc A Scheeren, Marianne Naspetti, Sean Diehl, Remko Schotte, Maho Nagasawa, Erwin Wijnands, Ramon Gimeno, Florry A Vyth-Dreese, Bianca Blom and Hergen Spits
Nature Immunology 6, 303–313
(March 2005); doi:10.1038/ni1172
| Abstract | Full Text (HTML/PDF) |

article
Uncovering regulatory pathways that affect hematopoietic stem cell function using 'genetical genomics'
Leonid Bystrykh, Ellen Weersing, Bert Dontje, Sue Sutton, Mathew T Pletcher, Tim Wiltshire, Andrew I Su, Edo Vellenga, Jintao Wang, Kenneth F Manly, Lu Lu, Elissa J Chesler, Rudi Alberts, Ritsert C Jansen, Robert W Williams, Michael P Cooke and Gerald de Haan
Nature Genetics 37, 225–232
(March 2005); doi:10.1038/ng1497
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Mapping expression in randomized rodent genomes
Karl W Broman
Nature Genetics 37, 209–210
(March 2005); doi:10.1038/ng0305-209
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letters to nature
Nutrient control of glucose homeostasis through a complex of PGC-1α and SIRT1
Joseph T. Rodgers, Carlos Lerin, Wilhelm Haas, Steven P. Gygi, Bruce M. Spiegelman and Pere Puigserver
Nature 434, 113–118
(03 March 2005); doi:10.1038/nature03354
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review article
Intrinsically unstructured proteins and their functions
H. Jane Dyson and Peter E. Wright
Nature Reviews Molecular Cell Biology 6, 197–208
(March 2005); doi:10.1038/nrm1589
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article
Sequence-specific potent induction of IFN-α by short interfering RNA in plasmacytoid dendritic cells through TLR7
Veit Hornung, Margit Guenthner-Biller, Carole Bourquin, Andrea Ablasser, Martin Schlee, Satoshi Uematsu, Anne Noronha, Muthiah Manoharan, Shizuo Akira, Antonin de Fougerolles, Stefan Endres and Gunther Hartmann
Nature Medicine 11, 263–270
(March 2005); doi:10.1038/nm1191
| Abstract | Full Text (HTML/PDF) |

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Sensing the danger in RNA
Marjorie A Robbins and John J Rossi
Nature Medicine 11, 250–251
(March 2005); doi:10.1038/nm0305-250
| Full Text (HTML/PDF) |

article
Actin and hnRNP U cooperate for productive transcription by RNA polymerase II
Alexander Kukalev, Ylva Nord, Carina Palmberg, Tomas Bergman and Piergiorgio Percipalle
Nature Structural and Molecular Biology 12, 238–244
(March 2005); doi:10.1038/nsmb904
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article
The zinc finger transcription factor Th-POK regulates CD4 versus CD8 T-cell lineage commitment
Xiao He, Xi He, Vibhuti P. Dave, Yi Zhang, Xiang Hua, Emmanuelle Nicolas, Weihong Xu, Bruce A. Roe and Dietmar J. Kappes
Nature 433, 826–833
(24 February 2005); doi:10.1038/nature03338
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letters to nature
Pax3 functions at a nodal point in melanocyte stem cell differentiation
Deborah Lang, Min Min Lu, Li Huang, Kurt A. Engleka, Maozhen Zhang, Emily Y. Chu, Shari Lipner, Arthur Skoultchi, Sarah E. Millar and Jonathan A. Epstein
Nature 433, 884–887
(24 February 2005); doi:10.1038/nature03292
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Synthetic shRNAs as potent RNAi triggers
Despina Siolas, Cara Lerner, Julja Burchard, Wei Ge, Peter S Linsley, Patrick J Paddison, Gregory J Hannon and Michele A Cleary
Nature Biotechnology 23, 227–231
(February 2005); doi:10.1038/nbt1052
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Immunology: Guide for a cell-fate decision
Ellen A. Robey
Nature 433, 813–814
(24 February 2005); doi:10.1038/433813a
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OASIS, a CREB/ATF-family member, modulates UPR signalling in astrocytes
Shinichi Kondo, Tomohiko Murakami, Kouko Tatsumi, Maiko Ogata, Soshi Kanemoto, Kumi Otori, Ken Iseki, Akio Wanaka and Kazunori Imaizumi
Nature Cell Biology 7, 186–194
(February 2005); doi:10.1038/ncb1213
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review article
Assembly and function of RNA silencing complexes
Erik J. Sontheimer
Nature Reviews Molecular Cell Biology AOP published online 14 January 2005; doi:10.1038/nrm1568
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review article
Roles of interferon-regulatory factors in T-helper-cell differentiation
Michael Lohoff and Tak W. Mak
Nature Reviews Immunology 5, 125–135
(February 2005); doi:10.1038/nri1552
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An expression profile for diagnosis of lymph node metastases from primary head and neck squamous cell carcinomas
Paul Roepman, Lodewyk F A Wessels, Nienke Kettelarij, Patrick Kemmeren, Antony J Miles, Philip Lijnzaad, Marcel G J Tilanus, Ronald Koole, Gert-Jan Hordijk, Peter C van der Vliet, Marcel J T Reinders, Piet J Slootweg and Frank C P Holstege
Nature Genetics 37, 182–186
(February 2005); doi:10.1038/ng1502
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research article
Synthetic dsRNA Dicer substrates enhance RNAi potency and efficacy
Dong-Ho Kim, Mark A Behlke, Scott D Rose, Mi-Sook Chang, Sangdun Choi and John J Rossi
Nature Biotechnology 23, 222–226
(February 2005); doi:10.1038/nbt1051
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Dicing with siRNA
Bryan R.G. Williams
Nature Biotechnology 23, 181–182
(February 2005); doi:10.1038/nbt0205-181
| Full Text (HTML/PDF) |

article
Localized transfection on arrays of magnetic beads coated with PCR products
Mark Isalan, Maria Isabel Santori, Cayetano Gonzalez and Luis Serrano
Nature Methods 2, 113–118
(February 2005); doi:10.1038/nmeth732
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review article
Promoters in the environment: transcriptional regulation in its natural context
Ildefonso Cases and Víctor de Lorenzo
Nature Reviews Microbiology 3, 105–118
(February 2005); doi:10.1038/nrmicro1084
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letters to nature
Mitf cooperates with Rb1 and activates p21Cip1 expression to regulate cell cycle progression
Suzanne Carreira, Jane Goodall, Isil Aksan, S. Anna La Rocca, Marie-Dominique Galibert, Laurence Denat, Lionel Larue and Colin R. Goding
Nature 433, 764–769
(17 February 2005); doi:10.1038/nature03269
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letters to nature
Microarray analysis shows that some microRNAs downregulate large numbers of target mRNAs
Lee P. Lim, Nelson C. Lau, Philip Garrett-Engele, Andrew Grimson, Janell M. Schelter, John Castle, David P. Bartel, Peter S. Linsley and Jason M. Johnson
Nature 433, 769–773
(17 February 2005); doi:10.1038/nature03315
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research article
Biosynthetic labeling of RNA with uracil phosphoribosyltransferase allows cell-specific microarray analysis of mRNA synthesis and decay
Michael D Cleary, Christopher D Meiering, Eric Jan, Rebecca Guymon and John C Boothroyd
Nature Biotechnology 23, 232–237
(February 2005); doi:10.1038/nbt1061
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A window on the dynamics of biological switches
Michael Bittner
Nature Biotechnology 23, 183–184
(February 2005); doi:10.1038/nbt0205-183
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review article
DNA supercoiling — a global transcriptional regulator for enterobacterial growth?
Andrew Travers and Georgi Muskhelishvili
Nature Reviews Microbiology 3, 157–169
(February 2005); doi:10.1038/nrmicro1088
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letters to nature
The BRCA2 homologue Brh2 nucleates RAD51 filament formation at a dsDNA-ssDNA junction
Haijuan Yang, Qiubai Li, Jie Fan, William K. Holloman and Nikola P. Pavletich
Nature 433, 653–657
(10 February 2005); doi:10.1038/nature03234
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Cancer: Catalyst of a catalyst
Stephen C. Kowalczykowski
Nature 433, 591–592
(10 February 2005); doi:10.1038/433591a
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letters to nature
Structural basis for substrate binding, cleavage and allostery in the tRNA maturase RNase Z
Inés Li De La Sierra-Gallay, Olivier Pellegrini and Ciarán Condon
Nature 433, 657–661
(10 February 2005); doi:10.1038/nature03284
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article
FoxM1 is required for execution of the mitotic programme and chromosome stability
Jamila Laoukili, Matthijs R. H. Kooistra, Alexandra Brás, Jos Kauw, Ron M. Kerkhoven, Ashby Morrison, Hans Clevers and René H. Medema
Nature Cell Biology 7, 126–136
(February 2005); doi:10.1038/ncb1217
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FoxM1 dances with mitosis
Robert H. Costa
Nature Cell Biology 7, 108–110
(February 2005); doi:10.1038/ncb0205-108
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p53 induces differentiation of mouse embryonic stem cells by suppressing Nanog expression
Tongxiang Lin, Connie Chao, Shin'ichi Saito, Sharlyn J. Mazur, Maureen E. Murphy, Ettore Appella and Yang Xu
Nature Cell Biology 7, 165–171
(February 2005); doi:10.1038/ncb1211
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review article
Histone variants meet their match
Kavitha Sarma and Danny Reinberg
Nature Reviews Molecular Cell Biology 6, 139–149
(February 2005); doi:10.1038/nrm1567
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article
Accelerated re-epithelialization in β3-integrin-deficient- mice is associated with enhanced TGF-β1 signaling
L E Reynolds, F J Conti, M Lucas, R Grose, S Robinson, M Stone, G Saunders, C Dickson, R O Hynes, A Lacy-Hulbert and K Hodivala-Dilke
Nature Medicine 11, 167–174
(February 2005); doi:10.1038/nm1165
| Abstract | Full Text (HTML/PDF) |

research article
Functional annotation and network reconstruction through cross-platform integration of microarray data
Xianghong Jasmine Zhou, Ming-Chih J Kao, Haiyan Huang, Angela Wong, Juan Nunez-Iglesias, Michael Primig, Oscar M Aparicio, Caleb E Finch, Todd E Morgan and Wing Hung Wong
Nature Biotechnology 23, 238–243
(February 2005); doi:10.1038/nbt1058
| First Paragraph | Full Text (HTML/PDF) |

article
Specific and potent RNAi in the nucleus of human cells
G Brett Robb, Kirk M Brown, Jaspreet Khurana and Tariq M Rana
Nature Structural and Molecular Biology 12, 133–137
(February 2005); doi:10.1038/nsmb886
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research article
Gene identification signature (GIS) analysis for transcriptome characterization and genome annotation
Patrick Ng, Chia-Lin Wei, Wing-Kin Sung, Kuo Ping Chiu, Leonard Lipovich, Chin Chin Ang, Sanjay Gupta, Atif Shahab, Azmi Ridwan, Chee Hong Wong, Edison T Liu and Yijun Ruan
Nature Methods 2, 105–111
(February 2005); doi:10.1038/nmeth733
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news and views
Transcriptome PETs: A genome's best friends
Brock A Peters and Victor E Velculescu
Nature Methods 2, 93–94
(February 2005); doi:10.1038/nmeth0205-93
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article
Bcl-2 expression suppresses mismatch repair activity through inhibition of E2F transcriptional activity
Cha-Kyung Youn, Hyun-Ju Cho, Soo-Hyun Kim, Hong-Beum Kim, Mi-Hwa Kim, In-Youb Chang, Jung-Sup Lee, Myung-Hee Chung, Kyung-Soo Hahm and Ho Jin You
Nature Cell Biology 7, 137–147
(February 2005); doi:10.1038/ncb1215
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news and views
A mismatched role for Bcl-2
Nicholas B. La Thangue
Nature Cell Biology 7, 101–102
(February 2005); doi:10.1038/ncb0205-101
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perspectives
Innovation: Control of DNA replication and its potential clinical exploitation
Michael A. Gonzalez, Kiku-e K. Tachibana, Ronald A. Laskey and Nicholas Coleman
Nature Reviews Cancer AOP published online 20 January 2005; doi:10.1038/nrc1548
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review article
RNA polymerases I and III, growth control and cancer
Robert J. White
Nature Reviews Molecular Cell Biology 6, 69–78
(January 2005); doi:10.1038/nrm1551
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article
Loss of silent-chromatin looping and impaired imprinting of DLX5 in Rett syndrome
Shin-ichi Horike, Shutao Cai, Masaru Miyano, Jan-Fang Cheng and Terumi Kohwi-Shigematsu
Nature Genetics 37, 31–40
(January 2005); doi:10.1038/ng1491
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news and views
Synapsis or silence
John Schimenti
Nature Genetics 37, 11–13
(January 2005); doi:10.1038/ng0105-11
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research article
Coordinate dual-gene transgenesis by lentiviral vectors carrying synthetic bidirectional promoters
Mario Amendola, Mary Anna Venneri, Alessandra Biffi, Elisa Vigna and Luigi Naldini
Nature Biotechnology 23, 108–116
(January 2005); doi:10.1038/nbt1049
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article
Role of the proto-oncogene Pokemon in cellular transformation and ARF repression
Takahiro Maeda, Robin M. Hobbs, Taha Merghoub, Ilhem Guernah, Arthur Zelent, Carlos Cordon-Cardo, Julie Teruya-Feldstein and Pier Paolo Pandolfi
Nature 433, 278–285
(20 January 2005); doi:10.1038/nature03203
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letters to nature
Protein kinase A signalling via CREB controls myogenesis induced by Wnt proteins
Alice E. Chen, David D. Ginty and Chen-Ming Fan
Nature 433, 317–322
(20 January 2005); doi:10.1038/nature03126
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news and views
Signal transduction: A new canon
Olivier Pourquié
Nature 433, 208–209
(20 January 2005); doi:10.1038/433208a
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article
Mapping DNA-protein interactions in large genomes by sequence tag analysis of genomic enrichment
Jonghwan Kim, Akshay A Bhinge, Xochitl C Morgan and Vishwanath R Iyer
Nature Methods 2, 47–53
(January 2005); doi:10.1038/nmeth726
| Abstract | Full Text (HTML/PDF) |

research article
FGF-20 and DKK1 are transcriptional targets of β-catenin and FGF-20 is implicated in cancer and development
Mario N Chamorro, Donald R Schwartz, Alin Vonica, Ali H Brivanlou, Kathleen R Cho and Harold E Varmus
EMBO Journal 24, 73–84
(January 2005); doi:10.1038/sj.emboj.7600460
| Abstract | Full Text (HTML/PDF) |

article
Akt and 14-3-3η regulate Miz1 to control cell-cycle arrest after DNA damage
Michael Wanzel, Daniela Kleine-Kohlbrecher, Steffi Herold, Andreas Hock, Katrien Berns, Jongsun Park, Brian Hemmings and Martin Eilers
Nature Cell Biology 7, 30–41
(January 2005); doi:10.1038/ncb1202
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letter
Inhibitors of histone deacetylases induce tumor-selective apoptosis through activation of the death receptor pathway
Alessandra Insinga, Silvia Monestiroli, Simona Ronzoni, Vania Gelmetti, Francesco Marchesi, Andrea Viale, Lucia Altucci, Clara Nervi, Saverio Minucci and Pier Giuseppe Pelicci
Nature Medicine 11, 71–76
(January 2005); doi:10.1038/nm1160
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letter
Tumor-selective action of HDAC inhibitors involves TRAIL induction in acute myeloid leukemia cells
Angela Nebbioso, Nicole Clarke, Emilie Voltz, Emmanuelle Germain, Concetta Ambrosino, Paola Bontempo, Rosana Alvarez, Ettore M Schiavone, Felicetto Ferrara, Francesco Bresciani, Alessandro Weisz, Angel R de Lera, Hinrich Gronemeyer and Lucia Altucci
Nature Medicine 11, 77–84
(January 2005); doi:10.1038/nm1161
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review article
RNAi-mediated pathways in the nucleus
Marjori A. Matzke and James A. Birchler
Nature Reviews Genetics 6, 24–35
(January 2005); doi:10.1038/nrg1500
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review article
p53: traffic cop at the crossroads of DNA repair and recombination
Sagar Sengupta and Curtis C. Harris
Nature Reviews Molecular Cell Biology 6, 44–55
(January 2005); doi:10.1038/nrm1546
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article
An oncogenic KRAS2 expression signature identified by cross-species gene-expression analysis
Alejandro Sweet-Cordero, Sayan Mukherjee, Aravind Subramanian, Han You, Jeffrey J Roix, Christine Ladd-Acosta, Jill Mesirov, Todd R Golub and Tyler Jacks
Nature Genetics 37, 48–55
(January 2005); doi:10.1038/ng1490
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news and views
Cross-species comparisons of cancer signaling
Thomas G Graeber and Charles L Sawyers
Nature Genetics 37, 7–8
(January 2005); doi:10.1038/ng0105-7
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letter
EGFR signaling attenuates Groucho-dependent repression to antagonize Notch transcriptional output
Peleg Hasson, Nirit Egoz, Clint Winkler, Gloria Volohonsky, Songtao Jia, Tama Dinur, Talila Volk, Albert J Courey and Ze'ev Paroush
Nature Genetics 37, 101–105
(January 2005); doi:10.1038/ng1486
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review article
Drosophila, the golden bug, emerges as a tool for human genetics
Ethan Bier
Nature Reviews Genetics 6, 9–23
(January 2005); doi:10.1038/nrg1503
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article
Protection of p27Kip1 mRNA by quaking RNA binding proteins promotes oligodendrocyte differentiation
Daniel Larocque, André Galarneau, Hsueh-Ning Liu, Michelle Scott, Guillermina Almazan and Stéphane Richard
Nature Neuroscience 8, 27–33
(January 2005); doi:10.1038/nn1359
| Abstract | Full Text (HTML/PDF) |

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