Research library: Transcription/Chromatin
2010:
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August
letter
Regulation of heterochromatic DNA replication by histone H3 lysine 27 methyltransferases
Yannick Jacob et al.
Nature 466, 987–991
(19 August 2010); doi:10.1038/nature09290
| Full Text (HTML / PDF) |
article
Mammalian Rap1 controls telomere function and gene expression through binding to telomeric and extratelomeric sites
Paula Martinez et al.
Nature Cell Biology 12, 768–780
(August 2010); doi:10.1038/ncb2081
| Summary | Full Text (HTML / PDF) |
news and views
Mammalian Rap1 widens its impact
Laure Crabbe & Jan Karlseder
Nature Cell Biology 12, 733–735
(August 2010); doi:10.1038/ncb2088
| Summary | Full Text (HTML / PDF) |
article
The transcription factor MafB antagonizes antiviral responses by blocking recruitment of coactivators to the transcription factor IRF3
Hwijin Kim & Brian Seed
Nature Immunology 11, 743–750
(August 2010); doi:10.1038/ni.1897
| Summary | Full Text (HTML / PDF) |
news and views
MafB as a type I interferon rheostat
Hozumi Motohashi & Kazuhiko Igarashi
Nature Immunology 11, 695–696
(August 2010); doi:10.1038/ni0810-695
| Full Text (HTML / PDF) |
letter
Epigenetic silencing of engineered L1 retrotransposition events in human embryonic carcinoma cells
Jose L. Garcia-Perez et al.
Nature 466, 769–773
(05 August 2010); doi:10.1038/nature09209
| Full Text (HTML / PDF) |
letter
Inactivating mutations of the histone methyltransferase gene EZH2 in myeloid disorders
Thomas Ernst et al.
Nature Genetics 42, 722–726
(August 2010); doi:10.1038/ng.621
| Summary | Full Text (HTML / PDF) |
July
letter
Phenotypic robustness conferred by apparently redundant transcriptional enhancers
Nicolás Frankel et al.
Nature 466, 490–493
(22 July 2010); doi:10.1038/nature09158
| Full Text (HTML / PDF) |
letter
Histone H4K20/H3K9 demethylase PHF8 regulates zebrafish brain and craniofacial development
Hank H. Qi et al.
Nature 466, 503–507
(22 July 2010); doi:10.1038/nature09261
| Full Text (HTML / PDF) |
letter
PHF8 mediates histone H4 lysine 20 demethylation events involved in cell cycle progression
Wen Liu et al.
Nature 466, 508–512
(22 July 2010); doi:10.1038/nature09272
| Full Text (HTML / PDF) |
letter
Phenotypic robustness conferred by apparently redundant transcriptional enhancers
Nicolás Frankel et al.
Nature 466, 490–493
(22 July 2010); doi:10.1038/nature09158
| Full Text (HTML / PDF) |
article
A paired-end sequencing strategy to map the complex landscape of transcription initiation
Ting Ni et al.
Nature Methods 7, 521–527
(July 2010); doi:10.1038/nmeth.1464
| Summary | Full Text (HTML / PDF) |
news and views
Illuminating eukaryotic transcription start sites
John A Stamatoyannopoulos
Nature Methods 7, 501–503
(July 2010); doi:10.1038/nmeth0710-501
| Full Text (HTML / PDF) |
letter
Conserved role of intragenic DNA methylation in regulating alternative promoters
Alika K. Maunakea et al.
Nature 466, 253–257
(08 July 2010); doi:10.1038/nature09165
| Summary | Full Text (HTML / PDF) |
review
The nuclear pore complex: bridging nuclear transport and gene regulation
Caterina Strambio-De-Castillia, Mario Niepel & Michael P. Rout
Nature Reviews Molecular Cell Biology 11, 490–501
(July 2010); doi:10.1038/nrm2928
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article
Modulation of histone H3 lysine 56 acetylation as an antifungal therapeutic strategy
Hugo Wurtele et al.
Nature Medicine 16, 774–780
(July 2010); doi:10.1038/nm.2175
| Summary | Full Text (HTML / PDF) |
article
RNA-mediated displacement of an inhibitory snRNP complex activates transcription elongation
Iván D'Orso & Alan D Frankel
Nature Structural & Molecular Biology 17, 815–821
(July 2010); doi:10.1038/nsmb.1827
| Summary | Full Text (HTML / PDF) |
article
TERRA transcripts are bound by a complex array of RNA-binding proteins
Isabel López de Silanes, Martina Stagno d'Alcontres & Maria A Blasco
Nature Communications 1, 1–9
(June 2010); doi:10.1038/ncomms1032
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letter
Small regulatory RNAs inhibit RNA polymerase II during the elongation phase of transcription
Shouhong Guang et al.
Nature 465, 1097–1101
(24 June 2010); doi:10.1038/nature09095
| Full Text (HTML / PDF) |
review
All things must pass: contrasts and commonalities in eukaryotic and bacterial mRNA decay
Joel G. Belasco
Nature Reviews Molecular Cell Biology 11, 467–478
(July 2010); doi:10.1038/nrm2917
| Summary | Full Text (HTML / PDF) |
review
Ubiquitin signalling in DNA replication and repair
Helle D. Ulrich & Helen Walden
Nature Reviews Molecular Cell Biology 11, 479–489
(July 2010); doi:10.1038/nrm2921
| Summary | Full Text (HTML / PDF) |
review
Covalent histone modifications — miswritten, misinterpreted and mis-erased in human cancers
Ping Chi, C. David Allis & Gang Greg Wang
Nature Reviews Cancer 10, 457–469
(July 2010); doi:10.1038/nrc2876
| Summary | Full Text (HTML / PDF) |
article
Repressive and active histone methylation mark distinct promoters in human and mouse spermatozoa
Urszula Brykczynska et al.
Nature Structural & Molecular Biology 17, 679–687
(June 2010); doi:10.1038/nsmb.1821
| Summary | Full Text (HTML / PDF) |
June
review
Inducible gene expression: diverse regulatory mechanisms
Vikki M. Weake & Jerry L. Workman
Nature Reviews Genetics 11, 426–437
(June 2010); doi:10.1038/nrg2781
| Summary | Full Text (HTML / PDF) |
review
Condensin and cohesin complexity: the expanding repertoire of functions
Andrew J. Wood, Aaron F. Severson & Barbara J. Meyer
Nature Reviews Genetics 11, 391–404
(June 2010); doi:10.1038/nrg2794
| Summary | Full Text (HTML / PDF) |
brief communication
Cortical DNA methylation maintains remote memory
Courtney A Miller et al.
Nature Neuroscience 13, 664–666
(June 2010); doi:10.1038/nn.2560
| Summary | Full Text (HTML / PDF) |
May
article
Widespread transcription at neuronal activity-regulated enhancers
Tae-Kyung Kim et al.
Nature 465, 182–187
(13 May 2010); doi:10.1038/nature09033
| Full Text (HTML / PDF) |
news and views
Transcription: Enhancers make non-coding RNA
Bing Ren
Nature 465, 173–174
(13 May 2010); doi:10.1038/465173a
| Full Text (HTML / PDF) |
letter
Histone H2A deubiquitinase activity of the Polycomb repressive complex PR-DUB
Johanna C. Scheuermann et al.
Nature 465, 243–247
(13 May 2010); doi:10.1038/nature08966
| Full Text (HTML / PDF) |
article
Mitotic cell-cycle progression is regulated by CPEB1 and CPEB4-dependent translational control
Isabel Novoa, Javier Gallego, Pedro G. Ferreira & Raul Mendez
Nature Cell Biology 12, 447–456
(May 2010); doi:10.1038/ncb2046
| Summary | Full Text (HTML / PDF) |
article
Deciphering the transcriptional complex critical for RhoA gene expression and cancer metastasis
Chia-Hsin Chan et al.
Nature Cell Biology 12, 457–467
(May 2010); doi:10.1038/ncb2047
| Summary | Full Text (HTML / PDF) |
letter
GEMC1 is a TopBP1-interacting protein required for chromosomal DNA replication
Alessia Balestrini, Claudia Cosentino, Alessia Errico, Elizabeth Garner & Vincenzo Costanzo
Nature Cell Biology 12, 484–491
(May 2010); doi:10.1038/ncb2050
| Summary | Full Text (HTML / PDF) |
April
letter
Nucleosome dynamics define transcriptional enhancers
Housheng Hansen He et al.
Nature Genetics 42, 343–347
(April 2010); doi:10.1038/ng.545
| Summary | Full Text (HTML / PDF) |
March
letter
TGF-β-mediated phosphorylation of hnRNP E1 induces EMT via transcript-selective translational induction of Dab2 and ILEI
Arindam Chaudhury et al.
Nature Cell Biology 12, 286–293
(March 2010); doi:10.1038/ncb2029
| Summary | Full Text (HTML / PDF) |
article
Consolidation of the cancer genome into domains of repressive chromatin by long-range epigenetic silencing (LRES) reduces transcriptional plasticity
Marcel W. Coolen et al.
Nature Cell Biology 12, 235–246
(March 2010); doi:10.1038/ncb2023
| Summary | Full Text (HTML / PDF) |
review
Principles and challenges of genome-wide DNA methylation analysis
Peter W. Laird
Nature Reviews Genetics 11, 191–203
doi:10.1038/nrg2732
| Summary | Full Text (HTML / PDF) |
review
Establishing, maintaining and modifying DNA methylation patterns in plants and animals
Julie A. Law & Steven E. Jacobsen
Nature Reviews Genetics 11, 204–220
doi:10.1038/nrg2719
| Summary | Full Text (HTML / PDF) |
article
Reprogramming towards pluripotency requires AID-dependent DNA demethylation
Nidhi Bhutani et al.
Nature 463, 1042–1047
(25 February 2010); doi:10.1038/nature08752
| Full Text (HTML / PDF) |
February
article
Variability in gene expression underlies incomplete penetrance
Arjun Raj, Scott A. Rifkin, Erik Andersen & Alexander van Oudenaarden
Nature 463, 913–918
(18 February 2010); doi:10.1038/nature08781
| Full Text (HTML / PDF) |
article
Role of STAT5 in controlling cell survival and immunoglobulin gene recombination during pro-B cell development
Stephen Malin et al.
Nature Immunology 11, 171–179
(February 2010); doi:10.1038/ni.1827
| Summary | Full Text (HTML / PDF) |
brief communication
FRT-seq: amplification-free, strand-specific transcriptome sequencing
Lira Mamanova et al.
Nature Methods 7, 130–132
(February 2010); doi:10.1038/nmeth.1417
| Summary | Full Text (HTML / PDF) |
article
SLR-2 and JMJC-1 regulate an evolutionarily conserved stress-response network
Natalia V Kirienko & David S Fay
The EMBO Journal ,
doi:10.1038/emboj.2009.387
| Summary | Full Text (HTML / PDF) |
scientific reports
Polyadenylation and degradation of incomplete RNA polymerase I transcripts in mammalian cells
Natalia Shcherbik, Minshi Wang, Yevgeniya R Lapik, Leena Srivastava & Dimitri G Pestov
EMBO reports 11, 106–111
(February 2010); doi:10.1038/embor.2009.271
| Summary | Full Text (HTML / PDF) |
January
article
The transcriptional network for mesenchymal transformation of brain tumours
Maria Stella Carro et al.
Nature 463, 318–325
(21 January 2010); doi:10.1038/nature08712
| Full Text (HTML / PDF) |
article
A synchronized quorum of genetic clocks
Tal Danino, Octavio Mondragón-Palomino, Lev Tsimring & Jeff Hasty
Nature 463, 326–330
(21 January 2010); doi:10.1038/nature08753
| Full Text (HTML / PDF) |
letter
FOXO-dependent regulation of innate immune homeostasis
Thomas Becker et al.
Nature 463, 369–373
(21 January 2010); doi:10.1038/nature08698
| Full Text (HTML / PDF) |
letter
Transcriptional role of cyclin D1 in development revealed by a genetic–proteomic screen
Frédéric Bienvenu et al.
Nature 463, 374–378
(21 January 2010); doi:10.1038/nature08684
| Full Text (HTML / PDF) |
review
Multilayered control of gene expression by stress-activated protein kinases
Eulàlia de Nadal & Francesc Posas
The EMBO Journal 29, 4–13
(January 2010); doi:10.1038/emboj.2009.346
| Summary | Full Text (HTML / PDF) |
article
Regulation of the osteoblast-specific transcription factor Osterix by NO66, a Jumonji family histone demethylase
Krishna M Sinha, Hideyo Yasuda, Madelene M Coombes, Sharon Y R Dent & Benoit de Crombrugghe
The EMBO Journal 29, 68–79
(January 2010); doi:10.1038/emboj.2009.332
| Summary | Full Text (HTML / PDF) |
perspective
Emerging roles of ATF2 and the dynamic AP1 network in cancer
Pablo Lopez-Bergami, Eric Lau & Ze'ev Ronai
Nature Reviews Cancer 10, 65–76
(January 2010); doi:10.1038/nrc2681
| Summary | Full Text (HTML / PDF) |
letter
Endogenous non-retroviral RNA virus elements in mammalian genomes
Masayuki Horie et al.
Nature 463, 84–87
(07 January 2010); doi:10.1038/nature08695
| Summary | Full Text (HTML / PDF) |
news and views
Virology: Bornavirus enters the genome
Cédric Feschotte
Nature 463, 39–40
(07 January 2010); doi:10.1038/463039a
| Full Text (HTML / PDF) |
article
A p53-dependent mechanism underlies macrocytic anemia in a mouse model of human 5q– syndrome
Jillian L Barlow et al.
Nature Medicine 16, 59–66
(January 2010); doi:10.1038/nm.2063
| Summary | Full Text (HTML / PDF) |
article
Identification of miR-145 and miR-146a as mediators of the 5q– syndrome phenotype
Daniel T Starczynowski et al.
Nature Medicine 16, 49–58
(January 2010); doi:10.1038/nm.2054
| Summary | Full Text (HTML / PDF) |
news and views
Myelodysplasia: battle in the bone marrow
Yan Liu, Takashi Asai & Stephen D Nimer
Nature Medicine 16, 30–32
(January 2010); doi:10.1038/nm0110-30
| Full Text (HTML / PDF) |
letter
Wt1 is required for cardiovascular progenitor cell formation through transcriptional control of Snail and E-cadherin
Ofelia M Martínez-Estrada et al.
Nature Genetics 42, 89–93
(January 2010); doi:10.1038/ng.494
| Summary | Full Text (HTML / PDF) |
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