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Research library: Yeast
2003: December | November | October | September | August | July | June | May | April | March | February | January
Other Years: 2002 | 2004 | 2005 | 2006 | 2007 | 2008
letters to nature
Optimization of specificity in a cellular protein interaction network by negative selection
Ali Zarrinpar, Sang-Hyun Park and Wendell A. Lim
Nature 426, 676–680
(11 December 2003); doi:10.1038/nature02178
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news and views
Signal transduction: Molecular monogamy
Drew Endy and Michael B. Yaffe
Nature 426, 614–615
(11 December 2003); doi:10.1038/426614a
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letter
Scaffold-mediated symmetry breaking by Cdc42p
Javier E. Irazoqui, Amy S. Gladfelter and Daniel J. Lew
Nature Cell Biology 5, 1062–1070
(December 2003); doi:10.1038/ncb1068
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news and views
Go ahead, break my symmetry!
Kendall J. Blumer and John A. Cooper
Nature Cell Biology 5, 1048–1049
(December 2003); doi:10.1038/ncb1203-1048
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letter
Computational discovery of gene modules and regulatory networks
Ziv Bar-Joseph, Georg K Gerber, Tong Ihn Lee, Nicola J Rinaldi, Jane Y Yoo, François Robert, D Benjamin Gordon, Ernest Fraenke, Tommi S Jaakkola, Richard A Young, & David K Gifford
Nature Biotechnology 21,1337–1342
(November 2003); doi:10.1038/nbt890
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letter
Reconstructing genetic networks in yeast
Zhaolei Zhang & Mark Gerstein
Nature Biotechnology 21,1295–1297
(November 2003); doi:10.1038/nbt1103-1295
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new and views
Playing tag with the yeast proteome
Brenda J Andrews, Gary D Bader & Charles Boone
Nature Biotechnology 21,1297–1299
(November 2003); doi:10.1038/nbt1103-1297
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letters to nature
ATP-dependent reduction of cysteine-sulphinic acid by S. cerevisiae sulphiredoxin
Benoît Biteau, Jean Labarre and Michel B. Toledano
Nature 425, 980–984
(30 October 2003); doi:10.1038/nature02075
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news and views
Evolution thinks modular
Alessandro Vespignani
Nature Genetics 35, 118–119
(October 2003); doi:10.1038/ng1003-118
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article
Global analysis of protein localization in budding yeast
Won-Ki Huh, James V. Falvo, Luke C. Gerke, Adam S. Carroll, Russell W. Howson, Jonathan S. Weissman and Erin K. O'Shea
Nature 425, 686–691
(16 October 2003); doi:10.1038/nature02026
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letters to nature
Global analysis of protein expression in yeast
Sina Ghaemmaghami, Won-Ki Huh, Kiowa Bower, Russell W. Howson, Archana Belle, Noah Dephoure, Erin K. O'Shea and Jonathan S. Weissman
Nature 425, 737–741
(16 October 2003); doi:10.1038/nature02046
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news and views
Proteomics: Where's Waldo in yeast?
James A. Wohlschlegel and John R. Yates
Research in yeast provides the tools and benchmarks for a wide sweep of biology. The latest results reveal the most complete picture yet of the levels and locations of protein production in the organism.
Nature 425, 671–672
(16 October 2003); doi:10.1038/425671a
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article
Phenotypic alteration of eukaryotic cells using randomized libraries of artificial transcription factors
Kyung-Soon Park, Dong-ki Lee, Horim Lee, Yangsoon Lee, Young-Soon Jang, Yong Ha Kim, Hyo-Young Yang, Sung-I Lee, Wongi Seol1 & Jin-Soo Kim
Nature Biotechnology 21, 1208–1214
(October 2003); doi:10.1038/nbt868
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letter
Evolutionary conservation of motif constituents in the yeast protein interaction network
S Wuchty, Z. N. Oltvai and A-L. Barabási
Nature Genetics 35, 176–179
(October 2003); doi:10.1038/ng1242
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letter
Targeted movement of cell end factors in fission yeast
Heidi Browning, David D. Hackney and Paul Nurse
Nature Cell Biology 5, 812–818
(September 2003); doi:10.1038/ncb1034
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article
Trans-acting regulatory variation in Saccharomyces cerevisiae and the role of transcription factors
Gaël Yvert, Rachel B. Brem, Jacqueline Whittle, Joshua M. Akey, Eric Foss, Erin N. Smith, Rachel Mackelprang and Leonid Kruglyak
Nature Genetics 35, 57–64
(September 2003); doi:10.1038/ng1222
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letters to nature
Small molecule activators of sirtuins extend Saccharomyces cerevisiae lifespan
Konrad T. Howitz, Kevin J. Bitterman, Haim Y. Cohen, Dudley W. Lamming, Siva Lavu, Jason G. Wood, Robert E. Zipkin, Phuong Chung, Anne Kisielewski, Li-Li Zhang, Brandy Scherer and David A. Sinclair
Nature 425, 191–196
(11 September 2003); doi:10.1038/nature01960
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news and views
Ageing: A toast to long life
Toren Finkel
Nature 425, 132–133
(11 September 2003); doi:10.1038/425132a
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letters to nature
S-phase checkpoint proteins Tof1 and Mrc1 form a stable replication-pausing complex
Yuki Katou, Yutaka Kanoh, Masashige Bando, Hideki Noguchi, Hirokazu Tanaka, Toshihiko Ashikari, Katsunori Sugimoto and Katsuhiko Shirahige
Nature 424, 1078–1083
(28 August 2003); doi:10.1038/nature01900
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letters to nature
Feedback regulation of MAPK signalling by an RNA-binding protein
Reiko Sugiura, Ayako Kita, Yasuhito Shimizu, Hisato Shuntoh, Susie O. Sio and Takayoshi Kuno
Nature 424, 961–965
(21 August 2003); doi:10.1038/nature01907
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letters to nature
Machinery for protein sorting and assembly in the mitochondrial outer membrane
Nils Wiedemann, Vera Kozjak, Agnieszka Chacinska, Birgit Schönfisch, Sabine Rospert, Michael T. Ryan, Nikolaus Pfanner and Chris Meisinger
Nature 424, 565–571
(31 July 2003); doi:10.1038/nature01753
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news and views
Cell biology: Moving inside membranes
Katsuyoshi Mihara
Nature 424, 505–506
(31 July 2003); doi:10.1038/424505a
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letter
Ubp3 requires a cofactor, Bre5, to specifically de-ubiquitinate the COPII protein, Sec23
Mickaël Cohen, Françoise Stutz, Naïma Belgareh, Rosine Haguenauer-Tsapis and Catherine Dargemont
Nature Cell Biology 5, 661–667
(July 2003); doi:10.1038/ncb1003
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letters to nature
Cks1-dependent proteasome recruitment and activation of CDC20 transcription in budding yeast
May C. Morris, Peter Kaiser, Stanislav Rudyak, Chris Baskerville, Mark H. Watson and Steven I. Reed
Nature 423, 1009–1013
(26 June 2003); doi:10.1038/nature01720
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research article
Discovering potent and selective reversible inhibitors of enzymes in complex proteomes
Donmienne Leung, Christophe Hardouin, Dale L Boger and Benjamin F Cravatt
Nature Biotechnology 21, 687–691
(June 2003); doi:10.1038/nbt826
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research article
Global protein function prediction from protein-protein interaction networks
Alexei Vazquez, Alessandro Flammini, Amos Maritan and Alessandro Vespignani
Nature Biotechnology 21, 697–700
(June 2003); doi:10.1038/nbt825
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letters to nature
Fission yeast mod5p regulates polarized growth through anchoring of tea1p at cell tips
Hilary A. Snaith and Kenneth E. Sawin
Nature 423, 647–651
(05 June 2003); doi:10.1038/nature01672
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article
Module networks: identifying regulatory modules and their condition-specific regulators from gene expression data
Eran Segal, Michael Shapira, Aviv Regev, Dana Pe'er, David Botstein, Daphne Koller and Nir Friedman
Nature Genetics 34, 166–176
(June 2003); doi:10.1038/ng1165
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letters to nature
Mitochondrial membrane remodelling regulated by a conserved rhomboid protease
G. Angus McQuibban, Saroj Saurya and Matthew Freeman
Nature 423, 537–541
(29 May 2003); doi:10.1038/nature01633
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letters to nature
DNA helicase Srs2 disrupts the Rad51 presynaptic filament
Lumir Krejci, Stephen Van Komen, Ying Li, Jana Villemain, Mothe Sreedhar Reddy, Hannah Klein, Thomas Ellenberger and Patrick Sung
Nature 423, 305–309
(15 May 2003); doi:10.1038/nature01577
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letters to nature
The Srs2 helicase prevents recombination by disrupting Rad51 nucleoprotein filaments
Xavier Veaute, Josette Jeusset, Christine Soustelle, Stephen C. Kowalczykowski, Eric Le Cam and Francis Fabre
Nature 423, 309–312
(15 May 2003); doi:10.1038/nature01585
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news and views
Molecular biology: Disruptive influence
Marco Foiani
Nature 423, 234–235
(15 May 2003); doi:10.1038/423234a
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letters to nature
Nicotinamide and PNC1 govern lifespan extension by calorie restriction in Saccharomyces cerevisiae
Rozalyn M. Anderson, Kevin J. Bitterman, Jason G. Wood, Oliver Medvedik and David A. Sinclair
Nature 423, 181–185
(08 May 2003); doi:10.1038/nature01578
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news and views
Molecular physiology: Tuned for longer life
Richard Turner
Nature 423, 125
(08 May 2003); doi:10.1038/423125a
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letter
Sir3p phosphorylation by the Slt2p pathway effects redistribution of silencing function and shortened lifespan
Alo Ray, Ronald E. Hector, Nilanjan Roy, Jee-Hyeon Song, Kathleen L. Berkner and Kurt W. Runge
Nature Genetics 33, 522–526
(April 2003); doi:10.1038/ng1132
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review article
Yeasts make their mark
Fred Chang and Matthias Peter
Nature Cell Biology 5, 294–299
(April 2003); doi:10.1038/ncb0403-294
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letter
A non-proteolytic function of separase links the onset of anaphase to mitotic exit
Matt Sullivan and Frank Uhlmann
Nature Cell Biology 5, 249–254
(March 2003); doi:10.1038/ncb940
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news and views
Multitasking at mitotic exit
Karen E. Ross and Orna Cohen-Fix
Nature Cell Biology 5, 188–190
(March 2003); doi:10.1038/ncb0303-188
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letters to nature
Regulated degradation of a class V myosin receptor directs movement of the yeast vacuole
Fusheng Tang, Emily J. Kauffman, Jennifer L. Novak, Johnathan J. Nau, Natalie L. Catlett and Lois S. Weisman
Nature 422, 87–92
(06 March 2003); doi:10.1038/nature01453
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review article
Tor signalling in bugs, brain and brawn
Estela Jacinto and Michael N. Hall
Nature Reviews Molecular Cell Biology 4, 117–126
(February 2003); doi:10.1038/nrm1018
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letter
Yeast epsin-related proteins required for Golgi-endosome traffic define a γ-adaptin ear-binding motif
Mara C. Duncan, Giancarlo Costaguta and Gregory S. Payne
Nature Cell Biology 5, 77–81
(January 2003); doi:10.1038/ncb901
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article
TCRs with high affinity for foreign pMHC show self-reactivity
Phillip D. Holler, Lukasz K. Chlewicki and David M. Kranz
Nature Immunology 4, 55–62
(January 2003); doi:10.1038/ni863
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article
Unconventional tethering of Ulp1 to the transport channel of the nuclear pore complex by karyopherins
Vikram Govind Panse, Bernhard Küster, Thomas Gerstberger and Ed Hurt
Nature Cell Biology 5, 21–27
(January 2003); doi:10.1038/ncb893
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letters to nature
Srb10/Cdk8 regulates yeast filamentous growth by phosphorylating the transcription factor Ste12
Chris Nelson, Susan Goto, Karen Lund, Wesley Hung and Ivan Sadowski
Nature 421, 187–190
(09 January 2003); doi:10.1038/nature01243
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letters to nature
Role of duplicate genes in genetic robustness against null mutations
Zhenglong Gu, Lars M. Steinmetz, Xun Gu, Curt Scharfe, Ronald W. Davis and Wen-Hsiung Li
Nature 421, 63–66
(02 January 2003); doi:10.1038/nature01198
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news and views
Molecular evolution: Duplication, duplication
Axel Meyer
Nature 421, 31–32
(02 January 2003); doi:10.1038/421031a
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