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In brief: October 2007

Post-translational modification

SUMO-targeted ubiquitin ligases in genome stability
Prudden, J. et al.
EMBO J. 26, 4089–4101 (2007) | Article | PubMed |

Conserved function of RNF4 family proteins in eukaryotes: targeting a ubiquitin ligase to SUMOylated proteins
Sun, H. et al.
EMBO J. 26, 4102–4112 (2007) | Article | PubMed |

Both groups identified a family of SUMO-targeted ubiquitin (Ub) ligases (STUbLs) that contain a SUMO-interacting motif, through which STUbLs are recruited to sumoylated proteins, and a RING-finger domain. Mammalian RNF4 is an E3 Ub ligase, whereas the Schizosaccharomyces pombe proteins Rfp1 and Rfp2 each heterodimerize with Slx8, which has Ub ligase activity. Cells that lack Rfp1/2–Slx8 have genomic instability, are hypersensitive to genotoxic stress and accumulate sumoylated proteins. Expression of mammalian RNF4 rescued the mutant phenotype, which demonstrates the functional conservation of STUbLs. The mutant phenotype was also suppressed by deletion of the SUMO ligase Pli1, which suggests that STUbLs regulate homeostasis of the SUMO pathway.

MicroRNA

MicroRNA control of Nodal signalling
Martello, G. et al.
Nature 449, 183–188 (2007) | Article | PubMed |

Target protectors reveal dampening and balancing of Nodal agonist and antagonist by miR-430
Choi, W.-Y. et al.
Science 2007 published online 30 Aug 2007 | Article | PubMed |

Martello et al. showed that the microRNAs miR-15 and miR-16 negatively regulate signalling through the transforming growth factor-beta (TGFbeta) ligand Nodal in Xenopus laevis. The microRNAs antagonize the dorsal induction of Spemann's organizer by inhibiting expression of the Nodal type II receptor Acvr2a. miR-15 and miR-16 levels are enriched on the ventral side of the embryo because their expression is negatively regulated by dorsal Wnt/beta-catenin signalling. This generates a dorsal bias in Acvr2a expression that renders dorsal cells more responsive to Nodal signalling. Choi et al. identified the TGFbeta Nodal agonist squint and antagonist lefty as targets of the zebrafish miR-430. Protection of squint or lefty mRNAs from miR-430 using complementary morpholinos resulted in enhanced or reduced Nodal signalling, respectively, whereas simultaneous protection of squint and lefty caused an imbalance of the relative levels of agonist and antagonist and a reduction in Nodal signalling.

Dendritic cells

BDCA2/FcepsildotRIgamma complex signals through a novel BCR-like pathway in human plasmacytoid dendritic cells
Cao, W. et al.
PLoS Biol. 5, e248 (2007) | Article | PubMed |

Human plasmacytoid dendritic cells (pDCs) express a C-type lectin called BDCA2 (blood DC antigen 2), which lacks an identifiable signalling motif. BDCA2 is known to be a potent regulator of pDC function, although how it transduces signals is unknown. Here, Lanier, Liu and colleagues show that BDCA2 signals in pDCs by forming a complex with the transmembrane adaptor protein FceRIgamma (high-affinity Fc receptor for IgE, gamma-chain). The association of FcepsildotRIgamma with BDCA2 led to the activation of an immunoreceptor-based tyrosine activation motif (ITAM)-dependent signalling cascade, which was similar to that downstream of the B-cell receptor (BCR). This cascade suppressed the production of type I interferons and other cytokines in response to Toll-like receptor activation. Therefore, by associating with FcepsildotRIgamma, BDCA2 activates a BCR-like signalling pathway to regulate the immune function of pDCs in humans.

Metastasis

Activation of the RalGEF/Ral pathway promotes prostate cancer metastasis to bone
Yin, J. et al.
Mol. Cell Biol. 2007 published online 20 August 2007) | Article | PubMed |

Little is known about the pathways that control organ-specific metastasis. Yin et al. show that activated HRAS (HRASV12)-induced metastasis of a normally non-metastatic human prostate cancer cell line (DU145) to different organs in mice requires different signalling pathways downstream of HRASV12. Using different HRAS effector mutants, the authors found that the Raf–ERK (extracellular signal-regulated kinase) pathway controlled metastasis to the brain, whereas activation of Ral guanine nucleotide exchange factors (RalGEFs) caused metastasis to bone, the most frequent site of prostate cancer metastases. Loss of RALA also inhibited bone metastasis of a metastatic prostate cancer cell line (PC3) by blocking growth at the secondary site but not homing or initial colonization.

Therapy

Death-receptor O-glycosylation controls tumour-cell sensitivity to the proapoptotic ligand Apo2L/TRAIL
Wagner, K. W. et al.
Nature Med. 13, 1070–1077 (2007) | Article | PubMed |

Tumour necrosis factor-related apoptosis-inducing ligand (TRAIL) can induce apoptosis of cancer cells through its receptors death receptor 4 (DR4) and DR5. Although TRAIL is being developed as an anticancer therapy, it is not known why some cancers respond to this agent and others do not. Wagner et al. found that expression of the peptidyl O-glycosyltransferase GALNT14 correlated with TRAIL sensitivity in cancer cell lines, and about 30% of samples of various human tumour types had GALNT14 overexpression. Knockdown of GALNT14 in cell lines using small interfering RNA reduces TRAIL sensitivity, and O-glycosylation of DR4 and DR5 seems to be required for apoptotic signalling. These data indicate that O-glycosylation and GALNT14 expression could possibly serve as predictive biomarkers for the efficacy of TRAIL-based therapy.

Leukaemia

Cytokine-dependent imatinib resistance in mouse BCR-ABL+, Arf-null lymphoblastic leukemia
Williams, R. T., den Besten, W. & Sherr, C. J.
Genes Dev. 21, 2283–2287 (2007) | Article | PubMed |

Williams et al. show that expression of the oncogenic fusion protein BCR-ABL in mouse pre-B cells lacking the tumour suppressor ARF causes highly aggressive acute lymphocytic leukaemia (ALL) when the cells are intravenously inoculated into healthy syngeneic mice. These leukaemias are resistant to therapy with the BCR-ABL tyrosine kinase inhibitor imatinib, but recovered cells are sensitive, indicating that the resistance is non-tumour-cell-autonomous. If the pre-B cells also lack the cytokine receptor common gamma chain, which is required for signalling by multiple cytokine receptors, then imatinib sensitivity is restored, suggesting that microenvironmental cytokines can facilitate resistance to imatinib.

Gene regulation

Domain-wide regulation of gene expression in the human genome
Gierman, H. J. et al.
Genome Res. 17, 1286–1295 (2007) | Article | PubMed |

Transcriptomics has shown that human and mouse genomes contain many distinct clusters of either highly expressed or weakly expressed genes. This study provides the first evidence that residence in such domains contributes to the expression levels of genes. The expression of a GFP reporter construct that was integrated at 90 different positions correlated with the activity of the domains into which it was inserted. So, both regulation of individual genes by transcription factor complexes and domain-wide regulation seem to contribute to gene expression patterns in mammalian genomes.

Developmental biology

Wnt signaling mediates regional specification in the vertebrate face
Brugmann, S. A. et al.
Development 134, 3283–3295 (2007) | Article | PubMed |

This paper reports that the regional specification of the vertebrate face and the changes in face morphology that occur during evolution depend on the distribution of Wnt signalling during embryonic development. During embryogenesis, Wnt signalling is active in face regions that protrude at later stages, corresponding to areas of cell proliferation. Mice in which Wnt signalling was disrupted had a flatter midface and more widely set eyes. The fact that a similar treatment had comparable consequences in chicks suggests that the distribution of Wnt signalling determines species-specific facial features.

Molecular neuroscience

Extracellular stimuli specifically regulate localized levels of individual neuronal mRNAs
Willis, D. E. et al.
J. Cell Biol. 178, 965–980 (2007) | Article | PubMed |

Localized protein synthesis enables neurons to respond rapidly to changes in the environment. Here, the authors examined the effects of both growth-promoting and growth-inhibiting ligands on the localization of a broad population of mRNAs in regenerating sensory neurons. They found that these extracellular factors differentially regulate the transport of specific mRNAs from the cell body to subcellular regions adjacent to the ligand source, thus influencing local protein synthesis.

Neurodegenerative disease

HIV/gp120 decreases adult neural progenitor cell proliferation via checkpoint kinase-mediated cell-cycle withdrawal and G1 arrest
Okamoto, S. et al.
Cell Stem Cell 1, 230–236 (2007) | Article |

HIV-associated dementia (HAD) has been associated with reduced hippocampal neurogenesis, but the underlying molecular mechanisms are unclear. The authors showed that the HIV-envelope glycoprotein gp120, which is known to contribute to HAD pathology, reduced the proliferation of neural progenitor cells in vitro and in vivo by prolonging the G1 phase of the cell cycle. They also demonstrated the involvement of a signalling cascade comprising MAPK, MAPK-activated protein-kinase 2 and Cdc25B/C activities in these effects, providing new information on the molecular mechanisms that underlie HAD.

G-protein-coupled receptors

Nongenomic actions of bile acids. Synthesis and preliminary characterization of 23- and 6,23-akyl-substituted bile acid derivatives as selective modulators for the G-protein coupled receptor TGR5
Pellicciari, R. et al.
J. Med. Chem. 50, 4265–4268 (2007) | Article | PubMed |

TGR5, a G-protein-coupled receptor for bile acid, is a promising target for metabolic control but no selective and potent ligands are available. Pellicciari and colleagues identified alkyl-substituted derivatives of chenodeoxycholic acid that were potent and selective agonists of TGR5. Methylation at the C-23(S) position of natural bile acids conferred selectivity for TGR5 over the nuclear receptor for bile acids. These results show for the first time a pharmacological differentiation of genomic versus nongenomic effects mediated by bile-acid derivatives.

Protein biochemistry

Genetic selection with tunable stringency
Kleeb, A.C. et al.
Proc. Natl. Acad. Sci. USA 104, 13907–13912 (2007) | Article | PubMed |

Selection schemes are often based on complementation of a metabolic defect in a model microorganism. Kleeb et al. now design flexible stringency selection by adopting strategies similar to those that control metabolic flux in vivo. By providing variable amounts of an enzyme that shunts a given metabolite down an alternative pathway in shikimate biosynthesis, they were able to select for bacterial dehydratases with activities over a 50,000-fold range.

Virology

Poliovirus entry into human brain microvascular cells requires receptor-induced activation of SHP-2
Coyne, C. B. et al.
EMBO J. 26, 4016–4028 (2007) | Article | PubMed |

Human brain microvascular endothelial cells (HBMECs) retain many of the characteristics of brain endothelial cells, and so provide a useful model system to study how pathogens, such as poliovirus, cross the blood–brain barrier. The poliovirus receptor was found to be necessary for poliovirus infection of HBMECs and it was shown that poliovirus enters HBMECs by dynamin-dependent caveolar endocytosis. Detailed analysis of the downstream events that follow demonstrated that the virus–receptor interaction triggers intracellular signals that are essential for virus entry, including actin rearrangements and activation of the protein tyrosine phosphatase SHP-2.

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